Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2 113 5e-20 seq4 86.0 7e-12 >seq2 Length=32560536 Score = 113 bits (124), Expect = 5e-20 Identities = 413/642 (64%), Gaps = 19/642 (3%) Strand=Plus/Minus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||| ||||| || | ||| | || || ||||| || || || || | | || || | Sbjct 19587690 TTTCTGATACTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 19587631 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 |||||| ||||||| ||||| | | ||| | ||||| |||||| || || || Sbjct 19587630 TTCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCCCACAACCAAGCTCACCCAA 19587571 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 ||| ||||| || ||||| || ||||| |||| ||| ||||||| ||||| || | ||| Sbjct 19587570 TAACCTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCGTTCATTCCAACCAA 19587511 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCT--ATAGAGACGGCTTCAACAATT 21421 |||||| |||| |||| || | | ||| || || || ||| | Sbjct 19587510 AGCACAAGGAAGCGCTTCA--CAAACAAATTCTCTCTCAATCTCAACCGCATCACGGACA 19587453 Query 21422 ATATTTATTATCCTAGATGTACTAGGGGGATA---CAATAATTGTTTAAACATCAAACAT 21478 ||| || | | | | |||| | | ||| || | |||| ||||| Sbjct 19587452 ATAGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAA-AAGCGAATAAAGT--AAACAA 19587396 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 || ||||||||||| | |||||| || | || | || || ||||| |||||||| Sbjct 19587395 GCGAAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCA 19587336 Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAAAAGAAAAT 21597 |||||||| || | ||||| | ||| || |||| | |||| | ||| ||||| || || Sbjct 19587335 GGCATTAAACCACGTTTTTTAAGCCAGAAAATTG-CACAAAAACTTCCAGAAAAAAATAT 19587277 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATAT 21657 || ||||| |||||| ||||| | || |||| | ||| | | ||| || Sbjct 19587276 ACCTTCAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATCAGATGAATC---GAT 19587220 Query 21658 CCATTTTTCTGCCCATTTTGCCTTTTCTT--TAATACAATCAATTGTATCAATAGCTTTT 21715 |||||| ||||| | || |||||| ||||| ||| || ||||| || | Sbjct 19587219 CCATTTCATAGCCCAATCAGC--TTTCTTCGCGATACACGGAATCGTCTCAATTGCATGA 19587162 Query 21716 AAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATT 21775 || | | |||| || ||| ||| | || ||||||||| Sbjct 19587161 AACAAACGATTCTTCTCAATAGAATCATTGATATAAGTTTCAATCAAGAGACTATACATC 19587102 Query 21776 TCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAA 21817 |||||||| |||||||| ||||| ||||| || ||||| ||| Sbjct 19587101 TCAGAATGAATATTTTCGATCGCGATCTGGAAACCGTAGAAA 19587060 >seq4 Length=28907061 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || ||||||||||| || | ||| || || ||| |||| |||||| || ||||| | | Sbjct 2895776 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 2895717 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATAT 21570 || |||||||||||||||||||| | ||| ||||| Sbjct 2895716 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATAT 2895682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531641159273240