Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq28674 82.4 7e-11 >seq28674 Length=75340 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/212 (68%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||| || ||| | || ||| | || | ||||| | Sbjct 20592 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTTGAATCCTCC 20651 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| || || || || ||||| || || || || ||| Sbjct 20652 GACACCATCGACAACGTCAAAGCCAAAATCCAAGATAAGGAAGGAATTCCACCAGACCAA 20711 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||| |||||||||||||| | | |||||| Sbjct 20712 CAGCGTCTCATCTTCGCCGGAAAACAACTCGAAGACGGCCG----NNNNNNNNTTATAAC 20767 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||||||||| || ||||||| || || Sbjct 20768 ATCCAAAAAGAATCAACGCTCCATCTCGTTCT 20799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478428746932720