Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq28226 158 3e-33 seq2 158 3e-33 seq3 96.9 9e-15 seq7 87.8 5e-12 >seq28226 Length=90112 Score = 158 bits (174), Expect = 3e-33 Identities = 370/555 (67%), Gaps = 9/555 (2%) Strand=Plus/Plus Query 22402 TTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAA 22461 || || | ||||||| || |||| | |||| || || || |||||||| ||||| Sbjct 34553 TTGTTTCACGCGATTGAGACTATTCCTTGTATTACAAAGAAAGCTGATTGGGCTATGAAA 34612 Query 22462 TGGATGAA--CAA-TGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAA 22518 ||||| | || ||| |||||| || ||| | | |||| |||||| |||||| Sbjct 34613 TGGATCGATTCATCTGA---TTCATTTGCTGAAAGGATCGTTGCTTTTGCTTGTGTTGAA 34669 Query 22519 GGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATG 22578 || || || || |||||| || |||||||| |||||||| |||||||||| | ||| Sbjct 34670 GGTATATTTTTCTCTGGAAGTTTCTGTGCAATTTTTTGGCTTAAAAAACGTGGTTTAATG 34729 Query 22579 CCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTT 22638 || ||| |||| |||||||||||| | ||| || || || || |||||| ||||||| Sbjct 34730 CCTGGTTTAACTTTTTCAAATGAGCTTATTTCACGCGACGAAGGACTTCATTGCGATTTT 34789 Query 22639 GCGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCATATGAAACTGTACTTGAT 22698 || ||| || | ||| | | | | | ||||||| | || ||| Sbjct 34790 GCCTGTTTGATTTATTCG---CTTTTGAGGAATAAACTGAGTGAAGAGCGTGTGAAGACA 34846 Query 22699 ATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGT 22758 ||| | | || ||||| |||| | |||| ||||||| ||| | || | Sbjct 34847 ATTGTGCGTGACGCGGTTGAGATTGAGAGGGAATTTGTTTGCGAAGCGCTTCCTTGCGCT 34906 Query 22759 CTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTA 22818 | |||| || |||| || | |||||| |||||| | |||||||| ||| | | Sbjct 34907 TTGGTTGGAATGAATGGTGATTTGATGAGTCAGTATATTGAGTTTGTTGCTGATAGGTTG 34966 Query 22819 TTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAA 22878 || | || |||| || || |||||| || ||||| ||||| |||||||| Sbjct 34967 TTGTGTGAGCTTGGTTGTGAGAAAATTTATAATGTTCAGAATCCTTTTGATTGGATGGAT 35026 Query 22879 CTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAA 22938 | ||||| ||| | || || || || || || || || | ||||| ||||| || ||| Sbjct 35027 TTGATTTCGCTTCAGGGGAAAACTAACTTTTTTGAGAAGCGCGTTGGGGAATATCAGAAA 35086 Query 22939 GCAGGTGTTATGGAT 22953 || ||||||| || Sbjct 35087 GCTTCTGTTATGAAT 35101 >seq2 Length=32560536 Score = 158 bits (174), Expect = 3e-33 Identities = 349/520 (67%), Gaps = 9/520 (2%) Strand=Plus/Plus Query 22437 GAATAAGGCAGATTGGGCGCTGAAATGGATGAA--CAA-TGAACGTTCATTCGCGGAACG 22493 ||| || || |||||||| |||||||||| | || ||| |||||| || ||| | Sbjct 19587192 GAAGAAAGCTGATTGGGCTATGAAATGGATCGATTCATCTGA---TTCATTTGCTGAAAG 19587248 Query 22494 TCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTT 22553 | |||| |||||| |||||||| || || ||||||||| ||||||||||| || Sbjct 19587249 AATCGTTGCTTTTGCTTGTGTTGAAGGTATATTTTTTTCTGGAAGTTTTTGTGCAATTTT 19587308 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 ||||| |||||||||| | ||||| ||| |||| |||||||| ||| | ||| || Sbjct 19587309 CTGGCTTAAAAAACGTGGTTTAATGCCTGGTTTAACTTTTTCAAACGAGCTTATTTCACG 19587368 Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAA 22673 || || ||||||||| ||||| || ||| | || ||| | | | | | | || Sbjct 19587369 TGACGAAGGTCTTCATTGTGATTTCGCTTGTTTACTTTATTCG---CTTTTGAGAAAGAA 19587425 Query 22674 ACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATT 22733 |||| | || ||| |||| | |||| ||||| |||| | ||| Sbjct 19587426 ACTTAGTGAAGAGCGTGTGAAAACTATTGTCCGTGATGCGGTTGAGATTGAGAGAGAATT 19587485 Query 22734 TATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATA 22793 | |||| || ||| | || | | |||| || || | |||| |||||| || Sbjct 19587486 TGTTTGTGAAGCGCTTCCTTGTGCTTTGGTTGGAATGAACGGTGAATTGATGAGTCAGTA 19587545 Query 22794 TATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGT 22853 |||| | |||||||| ||| | |||| | || |||| || || |||||| || Sbjct 19587546 TATTGAGTTTGTTGCTGATAGGTTATTGGGTGAGCTTGGTTGTGGGAAAATTTATAATGT 19587605 Query 22854 CGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGA 22913 ||||| ||||| ||||||||| | ||||| ||| | || || || || || || || Sbjct 19587606 TCAGAATCCTTTTGATTGGATGGAATTGATTTCGCTTCAGGGGAAAACTAACTTTTTTGA 19587665 Query 22914 AAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGAT 22953 || | ||||| || || || ||||| ||||||| || Sbjct 19587666 GAAGCGCGTTGGGGAGTATCAGAAAGCTTCTGTTATGAAT 19587705 >seq3 Length=31061273 Score = 96.9 bits (106), Expect = 9e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| || ||||| || | || ||| | ||| | |||||| ||||| Sbjct 3456666 ATGAAAGAGGATAGTATTGAGGGGATTTACGATACATTGAAGGAGTGTGCTGTTATTAGT 3456725 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATT 363741 || |||||| ||||||||||| || | || || | ||||| | |||||||||| Sbjct 3456726 AAATCTGCAGGAGGAATTGGTGTTTCTGTTCATAACATACGTGCCTATGGCAGTTACATT 3456785 Query 363742 CGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACT 363801 ||||| ||| || || ||||| | ||||| ||| | |||||||| | | ||| Sbjct 3456786 CGCGGAACAAATGGGACTTCTAATGGTATTGTTCCAATGTTGCGTGTGTTCAATGACACT 3456845 Query 363802 GCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 || | || || || ||||| ||||| ||| | ||||| Sbjct 3456846 GCCCGTTATGTTGATCAGGGAGGAGGCAAGAGGAAAGG 3456883 >seq7 Length=30551617 Score = 87.8 bits (96), Expect = 5e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| |||||| | ||| | | ||||| ||||||||||||||||||||||| || Sbjct 6230855 CAGTTCTATGTAGCAAATGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATG 6230796 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || || ||||| || ||||| |||||| ||| || || | || ||| | || |||||| Sbjct 6230795 GGCCTGGGTGTGCCATTTAACATTGCATCTTATGCCCTCTTGACATGCATGATTGCTCAT 6230736 Query 111822 TTT 111824 || Sbjct 6230735 ATT 6230733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302701478837882