Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq28803 96.9 3e-15 seq4 96.9 3e-15 >seq28803 Length=52646 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||||| || || || | ||||| | || || ||| | Sbjct 33311 ATGCAGATCTTTGTGAAGACATTGACAGGGAAGACCATTACTTTGGAGGTTGAGAGCTCA 33252 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || ||| |||||| ||||| || ||||| ||||| || || Sbjct 33251 GACACCATTGACAATGTAAAAGCTAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 33192 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||||| | || ||||| || ||||||| ||||| | | ||||||||| Sbjct 33191 CAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACCTTGGCTGATTATAAC 33132 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAG 24216 || || || ||||| || ||||| | || | | ||||| |||| Sbjct 33131 ATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAG 33086 >seq4 Length=28907061 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | |||||||| | || ||| | || || ||| Sbjct 27565455 ATGCAGATCTTTGTTAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGTTCT 27565514 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||||| || |||||||| || || || ||||| Sbjct 27565515 GACACCATAGACAATGTCAAGGCCAAGATACAAGATAAAGAAGGTATTCCCCCAGATCAG 27565574 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| | ||| ||||| |||||||||| ||||| | | ||||||||| Sbjct 27565575 CAGAGGTTGATTTTTGCCGGAAAGCAGCTCGAAGATGGCAGAACCCTGGCTGATTATAAC 27565634 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || ||||| || || |||| Sbjct 27565635 ATCCAGAAAGAGTCAACTCTTCA 27565657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429731378812905