Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq28674 105 6e-18 seq28626 93.3 4e-14 seq4 91.5 1e-13 >seq28674 Length=75340 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || |||||||| || || || |||||||| || ||||| || || Sbjct 20816 ATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACCATCACACTCGAAGTCGAATCTTCT 20875 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | |||| || || ||| ||| ||||||||||| | || |||||| Sbjct 20876 GACACAATCG-ACAACGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 20934 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | || | ||| || || ||||| ||||||| | ||| | || |||||||| Sbjct 20935 ACAACGATTGATCTTTGCAGGAAAGCAATTGGAAGATGGTAGAACTCTTGCTGATTATAA 20994 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || || ||||||||||| | ||| |||| | || || || || |||| Sbjct 20995 TATCCAGAAAGAGTCTACGCTTCATTTGGTTCTTAGGTTACGTGGTGGAA 21044 >seq28626 Length=87040 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || ||||| || || || |||||||| ||| | || || ||| | Sbjct 42591 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCC 42532 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | |||| || ||| ||||| || || ||||| | || |||||| Sbjct 42531 GATACCATCG-ACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCTCCTGATCA 42473 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | || | ||| || || ||||| ||||||| | || | || |||||||| Sbjct 42472 GCAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGGACTCTTGCGGATTATAA 42413 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || || ||||||||||| ||||| |||| | || ||||| || |||| Sbjct 42412 TATCCAGAAAGAGTCTACGCTACATTTGGTTCTTAGGTTGCGCGGTGGAA 42363 >seq4 Length=28907061 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || ||||| ||||| ||||| ||| | || |||| Sbjct 27565455 ATGCAGATCTTTGTTAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGTTCT 27565514 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | |||| || || || || ||||||||||| | ||| ||||| Sbjct 27565515 GACACCATAG-ACAATGTCAAGGCCAAGATACAAGATAAAGAAGGTATTCCCCCAGATCA 27565573 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | |||| ||| || || || | ||||||| || |||| |||| |||||||| Sbjct 27565574 GCAGAGGTTGATTTTTGCCGGAAAGCAGCTCGAAGATGGCAGAACCCTGGCTGATTATAA 27565633 Query 115465 CATTCAAAAAGAGTCTACT 115483 ||| || |||||||| ||| Sbjct 27565634 CATCCAGAAAGAGTCAACT 27565652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425141564302120