Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq28226 210 3e-49 seq2 196 6e-45 seq3 93.3 5e-14 seq4 86.0 8e-12 >seq28226 Length=90112 Score = 210 bits (232), Expect = 3e-49 Identities = 468/690 (68%), Gaps = 12/690 (2%) Strand=Plus/Minus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||| || ||||| || || || || || ||||| |||||||| || | | || || Sbjct 35086 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 35027 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 ||||| |||| || ||||| ||||||||||||||| | | | || | ||| | | Sbjct 35026 ATCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCTCACAACCAAGCTCACACAA 34967 Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA--TA 32546 ||| ||||| || ||||| || ||||| |||||| |||| ||||||||| | | Sbjct 34966 CAACCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACCAA 34907 Query 32547 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 32606 || || ||||| || | || |||||| ||||| |||||||| | | Sbjct 34906 AGCGCAA--GGAAGCGCTTCGCAAACAAATTCCCTCTCAATCTCAACCGCGTCACGCACA 34849 Query 32607 ATAGATCTT-ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 32665 || | |||| || ||||||||| || || | ||| | | | |||||||| || Sbjct 34848 ATTG-TCTTCACACGCTCTTCACTCAGTTTATTCCTCAAAAGCGAATAAATCAAACAGGC 34790 Query 32666 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 32725 |||||||| || || || ||||| | ||| | || || ||||| || | || || Sbjct 34789 AAAATCGCAATGAAGTCCTTCGTCGCGTGAAATAAGCTCATTTGAAAAAGTTAAACCAGG 34730 Query 32726 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTC 32784 ||||| ||||| |||||||||||||| || | | || || |||||| || || || | Sbjct 34729 CATTAAACCACGTTTTTTAAGCCAAAAAATTG-CACAGAAACTTCCAGAGAAAAATATAC 34671 Query 32785 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGTATCCAC 32843 |||| || ||||| |||| | || || || | | | || || ||||| Sbjct 34670 CTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCAGATG-AATCGATCCAT 34612 Query 32844 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 32903 || ||||||||| || |||||| | | |||||| || ||||| || || | ||| | | Sbjct 34611 TTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATAGTCTCAATCGCGTGAAACAAA 34552 Query 32904 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 32963 || || ||| | ||| | | ||| || |||||||| ||||||||||| || ||| Sbjct 34551 CGATTCTTCTCAACAGAATCATGGATATAAGTTTCAATCAAGAGACTATACATCTCAGAA 34492 Query 32964 TGAATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCGGTAATCTGTAC 33022 ||||| || || || || || || ||||||||| ||||| | ||||| | | || || Sbjct 34491 TGAATATTCTCGATCGCAATCTGGAATCCGTAGAAAGCA-CGCGCCTCTGATACTTGAAC 34433 Query 33023 TTCTGTACAAAATCGTTCTGCTAAATTTTC 33052 |||| | |||| | |||| | ||| || Sbjct 34432 TTCTTTCATGAATCTTCCTGCAAGATTCTC 34403 Score = 86.0 bits (94), Expect = 8e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 33120 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 33179 ||||| || ||||| | || ||||| |||| ||| |||||||| | ||||| ||| Sbjct 34231 GTTAGGTTGTTCCAGTGATGAGGATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAT 34172 Query 33180 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 || || ||||| ||||| ||||| | |||||| | | | ||||||||||| || ||| Sbjct 34171 GAAGCTTCTGCTTTTTTGTACATTTCCCAGATTTTAGGGTATTGAATTGGGAACATA 34115 >seq2 Length=32560536 Score = 196 bits (216), Expect = 6e-45 Identities = 426/633 (67%), Gaps = 6/633 (1%) Strand=Plus/Minus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||| || || || || || || || || ||||| |||||||| || | | || || Sbjct 19587690 TTTCTGATACTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 19587631 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 |||||| |||| || ||||| ||||||||||||||| | | || | ||| | Sbjct 19587630 TTCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCCCACAACCAAGCTCACCCAA 19587571 Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT--A 32546 || ||||| || ||||| || ||||| |||||| ||||| |||||||| | | Sbjct 19587570 TAACCTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCGTTCATTCCAACCAA 19587511 Query 32547 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 32606 || || ||||| || || || ||||||| ||||| ||||| || | | Sbjct 19587510 AGCACAA--GGAAGCGCTTCACAAACAAATTCTCTCTCAATCTCAACCGCATCACGGACA 19587453 Query 32607 ATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 32666 |||| | | || |||||||| || | ||| | | | | ||||| ||| Sbjct 19587452 ATAGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCG 19587393 Query 32667 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 32726 ||||| || || ||||| ||||| | ||| | ||||| ||||| || | || ||| Sbjct 19587392 AAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGC 19587333 Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 32786 |||| ||||| ||||||||||| || || | ||| ||||||||| || || ||| Sbjct 19587332 ATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAAAAACTTCCAGAAAAAAATATACCT 19587273 Query 32787 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGTATCCACTT 32845 || || ||||| |||| | ||| || || | | | || || ||||| || Sbjct 19587272 TCAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATCAGATGA-ATCGATCCATTT 19587214 Query 32846 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 ||||||||| || ||||| | ||| || || ||||| || |||| ||| | | Sbjct 19587213 CATAGCCCAATCAGCTTTCTTCGCGATACACGGAATCGTCTCAATTGCATGAAACAAACG 19587154 Query 32906 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 32965 || || ||| || ||| || | ||| || |||||||| ||||||||||| || ||||| Sbjct 19587153 ATTCTTCTCAATAGAATCATTGATATAAGTTTCAATCAAGAGACTATACATCTCAGAATG 19587094 Query 32966 AATGTTTTCAATGGCCATTTGAAATCCGTAGAA 32998 ||| ||||| || || || || || |||||||| Sbjct 19587093 AATATTTTCGATCGCGATCTGGAAACCGTAGAA 19587061 >seq3 Length=31061273 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||||||||| | || | || |||| ||| | || | ||||||||||| |||||| Sbjct 3456869 TCCTCCCTGATCAACATAACGGGCAGTGTCATTGAACACACGCAACATTGGAACAATACC 3456810 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| || || ||||| || || || || || ||| |||||| || ||| || || Sbjct 3456809 ATTAGAAGTCCCATTTGTTCCGCGAATGTAACTGCCATAGGCACGTATGTTATGAACAGA 3456750 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| ||||| |||| || | || || || || ||||| || || Sbjct 3456749 AACACCAATTCCTCCTGCAGATTTACTAATAACAGCACACTCCTTCAATGTATCGTAAAT 3456690 Query 63406 GCCCTCTATACTATCATCCATCAT 63429 ||||| |||||||| || |||| Sbjct 3456689 CCCCTCAATACTATCCTCTTTCAT 3456666 Score = 89.7 bits (98), Expect = 7e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | || |||||||| |||||||||||| | | ||| | | || Sbjct 3456535 GTTCCAGCATTGAAAAGAGTTGGAGAAGCATGAGTAAACCATCTCTGAGACATCAAATGA 3456476 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || | | ||| || || ||||| | ||||||||| || | || | ||||||| Sbjct 3456475 TAAGTTTTGACAGCAGATTCAATATCATCCTTATGAATTCCAACAGAAACCCTCATTAAC 3456416 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAACAAGTAGGATTTTTCCAA 63645 || || ||||||||||| || | ||| | || | |||||||| || || | || | Sbjct 3456415 ATATGTTGAGGTCTTTCCAC-AACTTCTCCTTGAACTTTCAACAGATAAGACCTCTCAAG 3456357 Query 63646 AGTTTTAAAACCAAAATA 63663 ||||| || ||||| || Sbjct 3456356 GGTTTTGAATCCAAAGTA 3456339 >seq4 Length=28907061 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || ||||| ||||| ||||||||||||||| |||| ||| || || || || || Sbjct 2895776 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 2895717 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 32757 || ||||||| || | |||||||||||| ||||||| Sbjct 2895716 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATGG 2895680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633322700459600