Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq28107 111 2e-19 >seq28107 Length=123132 Score = 111 bits (122), Expect = 2e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 166428 TTGGATTTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCT 166486 || || |||| || ||||| || || || |||||||| || ||||| ||| || ||| Sbjct 14809 TTTGAGTTGCTGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCT 14868 Query 166487 ATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCA 166546 | || | ||||| || || || || | ||||| || || ||| ||| || |||| Sbjct 14869 ACCCAATAGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCA 14928 Query 166547 ACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGG 166606 ||| ||| |||| || || || ||||| || || || ||||| || || | ||| | | Sbjct 14929 ACTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAG 14988 Query 166607 GTGTAGCAGGTGTATTCGGTGGGTCACT 166634 ||||||| ||||||||||| || ||||| Sbjct 14989 GTGTAGCTGGTGTATTCGGCGGCTCACT 15016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566955112789600