Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq28226 224 1e-53 seq4 96.9 4e-15 seq3 93.3 5e-14 seq1 89.7 6e-13 seq32930 86.0 7e-12 seq30121 86.0 7e-12 seq2 86.0 7e-12 seq38621 84.2 2e-11 seq6 84.2 2e-11 seq7 82.4 8e-11 >seq28226 Length=90112 Score = 224 bits (248), Expect = 1e-53 Identities = 502/741 (68%), Gaps = 21/741 (3%) Strand=Plus/Minus Query 92786 TATTCATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTC 92845 ||||||||||| | ||| || ||||||||||| || ||||| || || || || | Sbjct 35102 TATTCATAACAGAAGCTTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCC 35043 Query 92846 CTTCCAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCAC 92903 | | | || ||| ||| || | | | ||||||| | |||||| || |||| Sbjct 35042 CCTGAAGCGAAATCAAATCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCTCAC 34983 Query 92904 CGATCAA-CTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCA 92962 | ||| ||| |||| || |||||||| ||||| || || |||||| |||||||||| Sbjct 34982 A-ACCAAGCTCACACAACAACCTATCAGCAACAAACTCAATATACTGACTCATCAAATCA 34924 Query 92963 CAATTCATTCCTAGAAGA-CGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTAC 93021 | ||||||||| | | | || | ||| || || ||| | || || |||| || | Sbjct 34923 CCATTCATTCCAACCAAAGCGCA-AGGAAGCGCTTCGCAAACAAATTCCCTCTCAATCTC 34865 Query 93022 AACGGCTTCTTTCAAGATT-TCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAAT 93080 ||| || || || ||| ||| | || | || || | ||| | | || || Sbjct 34864 AACCGCGTCACGCACAATTGTCT-TCACACG-CTCTTCACTCAGTTTATTCCT-CAAAAG 34808 Query 93081 TG--TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATT 93138 | || || || || ||||| ||| ||| | |||||||| ||||| || | |||||| Sbjct 34807 CGAATAAATCAAACAGGCAAAATCGCAATGAAGTCCTTCGTCGCGTGAAATAAGCTCATT 34748 Query 93139 GCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACT 93198 || |||||||| || | | || ||||| || |||||||| |||| | ||||| Sbjct 34747 TGAAAAAGTTAAACCAGGCATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACT 34688 Query 93199 ACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA---ATT 93255 ||||| |||||||||||||| || ||||| || || || | ||| ||||| || Sbjct 34687 TCCAGAGAAAAATATACCTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATC 34628 Query 93256 TGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAG 93315 | |||| ||||||||| | ||||||||| ||||| || |||||||||| | Sbjct 34627 AGATGAATC------GATCCATTTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAAT 34574 Query 93316 TGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGAT 93375 || || || |||| ||| | || ||| | ||||| | || || || || || Sbjct 34573 AGTCTCAATCGCGTGAAACAAACGATTCTTCTCAACAGAATCATGGATATAAGTTTCAAT 34514 Query 93376 TAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA 93435 || ||| |||||| |||||||| | |||||| || ||||| ||||||||||||||| Sbjct 34513 CAAGAGACTATACATCTCAGAATGAATATTCTCGATCGCAATCTGGAATCCGTAGAAAGC 34454 Query 93436 TCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTAT 93495 | || || | | || ||||||| ||||| || | ||||| || ||| || Sbjct 34453 ACGCGCCTCTGATACTTGAACTTCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACAAT 34394 Query 93496 ACCATCGGATGCTGCAAAAAA 93516 || ||||| || ||||| || Sbjct 34393 GCCGTCGGAAGCAGCAAAGAA 34373 Score = 98.7 bits (108), Expect = 1e-15 Identities = 91/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 93576 GATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635 |||||| || | ||||||||||||| | ||||| || || ||||||||||||||||||| Sbjct 34209 GATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCTGCTTTTTTGTACA 34150 Query 93636 TATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGATTAGGGTT 93687 | ||||| || | | ||||||||||| || || ||| ||||| | |||||| Sbjct 34149 TTTCCCAGATTTTAGGGTATTGAATTGGGAACAT-ACAGAAACGGTCAGGGTT 34098 >seq4 Length=28907061 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/95 (83%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||||| | | |||| Sbjct 25740287 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGC 25740228 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| ||||||| || ||||| Sbjct 25740227 GTGGGTTCAAATCCCACTTCTGACAATTTTTTATT 25740193 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||||| | | |||| Sbjct 25740407 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGC 25740348 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || ||||| ||||||| || || Sbjct 25740347 GTGGGTTCAAATCCCACTTCTGACAATTTTTT 25740316 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | ||||| Sbjct 13981917 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGCG 13981858 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 13981857 TGGGTTCAAATCCCACTTCTGACA 13981834 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 1541515 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 1541572 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 1541573 GCGTGGGTTCAAATCCCACTTCTGACAA 1541600 >seq3 Length=31061273 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/104 (81%), Gaps = 5/104 (5%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||||| | | |||| Sbjct 15486442 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGC 15486501 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||| || ||||| ||||||| || || | ||||||| Sbjct 15486502 GTGGGTTCAAATCCCACTTCTGACAATTTTTTTT---AATTTTT 15486542 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/106 (80%), Gaps = 7/106 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 679632 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 679575 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||| || ||||| |||||| ||| ||||| | ||||| Sbjct 679574 GCGTGGGTTCAAATCCCACTTCTGACATATT-TTATTTTATTTTTT 679530 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 5579046 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 5578989 Query 126325 GGGTTCGAACCCCACACCTGACAAA 126349 |||||| || |||||| ||| |||| Sbjct 5578988 GGGTTCAAATCCCACAGCTGTCAAA 5578964 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 14704896 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 14704839 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 14704838 GCGTGGGTTCAAATCCCACTTCTGACAA 14704811 >seq1 Length=28142018 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/106 (80%), Gaps = 7/106 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 19430415 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 19430472 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||| || ||||| ||||| |||| ||||| | ||||| Sbjct 19430473 GCGTGGGTTCAAATCCCACTTCTGAC-AATTTTTATTTTATTTTTT 19430517 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/95 (81%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 23148233 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCAAGAGAGGGC 23148292 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| ||||||| || ||||| Sbjct 23148293 GTGGGTTCAAATCCCACTTCTGACAATTTTTTATT 23148327 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 6/89 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 6591061 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 6591004 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||| || ||||| |||||||| Sbjct 6591003 GCGTGGGTTCAAATCCCACTTCTGACAAA 6590975 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 10388432 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 10388489 Query 126325 GGGTTCGAACCCCACACCTGACAAATTAT 126353 |||||| || |||||| ||| ||||| || Sbjct 10388490 GGGTTCAAATCCCACAGCTGTCAAATAAT 10388518 >seq32930 Length=2438 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/92 (82%), Gaps = 6/92 (7%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 1253 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAG 1310 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| ||||||| || Sbjct 1311 GGCGTGGGTTCAAATCCCACTTCTGACAATTT 1342 >seq30121 Length=2585 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/113 (78%), Gaps = 9/113 (8%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 1632 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 1575 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTAT---TATTGGAATTTTTGTTG 126370 |||||||||| || ||||| ||||||| || | |||| ||||| | ||| Sbjct 1574 GCGTGGGTTCAAATCCCACTTCTGACAATTTTTTTATATTTAAATTTATTTTG 1522 >seq2 Length=32560536 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 6/89 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 27178893 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 27178836 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||| || ||||| |||||||| Sbjct 27178835 GCGTGGGTTCAAATCCCACTTCTGACAAA 27178807 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 5966638 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 5966695 Query 126325 GGGTTCGAACCCCACACCTGACAAA 126349 |||||| || |||||| ||| |||| Sbjct 5966696 GGGTTCAAATCCCACAGCTGTCAAA 5966720 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 14252714 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 14252771 Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351 |||||| || |||||| ||| ||| || Sbjct 14252772 GGGTTCAAATCCCACAGCTGTCAATTT 14252798 >seq38621 Length=360382 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 278551 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 278608 Query 126325 GGGTTCGAACCCCACACCTGACAAA 126349 |||||| || |||||| ||| |||| Sbjct 278609 GGGTTCAAATCCCACAGCTGTCAAA 278633 >seq6 Length=22682783 Score = 84.2 bits (92), Expect = 2e-11 Identities = 77/96 (80%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 8921163 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 8921106 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||| || ||||| |||||||| | |||| Sbjct 8921105 CGTGGGTTCAAATCCCACTTCTGACAAAAAAATATT 8921070 >seq7 Length=30551617 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 20965657 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 20965714 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 20965715 GCGTGGGTTCAAATCCCACTTCTGACA 20965741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556588975361240