Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq9364 141 8e-29 seq3 141 8e-29 seq4 136 3e-27 seq28803 127 2e-24 seq28626 116 3e-21 seq5139 114 1e-20 seq28674 105 6e-18 seq1 105 6e-18 seq6 82.4 6e-11 >seq9364 Length=1264 Score = 141 bits (156), Expect = 8e-29 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 || || |||||||||| ||||| || || | || ||||| || | ||||||||||| | Sbjct 746 TTATATAGATGCAAATCTTTGTCAAGACCCTCACTGGTAAGACCATTACTCTTGAAGTTG 687 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 | | |||||||| | ||| || | || ||||||||||| ||||| || || |||| Sbjct 686 AGAGTTCCGATACCATAGACAATGTTAAGGCCAAAATTCAAGATAAGGAAGGGATCCCAC 627 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 | || || || ||| | || ||||| || |||||| | ||||| || ||| | ||| Sbjct 626 CGGACCAGCAGCGTTTGATTTTTGCTGGAAAACAGCTGGAGGACGGGCGGACCCTTGCCG 567 Query 22391 ATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||| ||||| || |||||| | ||||| ||| | || | || || ||| Sbjct 566 ATTACAACATCCAAAAGGAGTCCACCCTCCATTTGGTTCTCCGTCTCCGTGGTGGT 511 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| | || || || || |||| || || ||||| | | Sbjct 510 ATGCAAATCTTTGTGAAGACTCTCACTGGAAAGACCATCACCCTCGAGGTGGAGAGTTCT 451 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || ||||||||||| ||||| || ||||| || || Sbjct 450 GACACCATAGACAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCACCAGACCAG 391 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || || ||| | || ||| | | ||| | | ||||||||| Sbjct 390 CAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCAGGACCTTAGCTGATTACAAC 331 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||||||||| | ||| | || |||||| | || || ||| Sbjct 330 ATCCAGAAAGAATCCACTCTTCATCTTGTCTTGCGACTTCGTGGTGGT 283 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | || || || || | ||| | || || || | | | Sbjct 282 ATGCAGATTTTTGTGAAGACCCTTACTGGCAAGACTATTACTTTGGAGGTTGAGAGCTCA 223 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | ||| || ||||| |||||||||||||| || || || || Sbjct 222 GACACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATCCCCCCAGACCAG 163 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || || ||| | || ||| || || | ||||||||||| Sbjct 162 CAAAGGTTGATCTTTGCTGGAAAGCAGCTCGAAGATGGGCGAACTTTGGCCGATTACAAC 103 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||||||| | ||| | || | || ||| | |||||| Sbjct 102 ATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGGT 55 >seq3 Length=31061273 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| | ||||| || || ||||| ||||| || || | | Sbjct 12366176 ATGCAAATCTTTGTGAAGACTCTCACCGGAAAGACCGTCACCCTTGAGGTTGAGAGTTCG 12366235 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| || |||||||||||||| ||||||||||| || || Sbjct 12366236 GATACGATAGAAAATGTCAAGGTCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAG 12366295 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || ||||| || |||||| | |||||| | | || | | ||||||||| Sbjct 12366296 CAAAGGCTGATTTTTGCTGGAAAACAGCTTGAGGATGGCAGGACATTAGCTGATTACAAC 12366355 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||||||| | ||| | || |||||| | || || ||| Sbjct 12366356 ATCCAGAAGGAATCCACCCTTCATCTTGTCTTGCGACTTCGTGGTGGT 12366403 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||||||||| || | || || |||||| | ||| | || || || | | | Sbjct 12366404 ATGCAGATTTTTGTTAAGACGCTTACAGGCAAAACGATTACTTTGGAGGTTGAGAGCTCA 12366463 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | || || ||||||||||||||||||||||| || || || Sbjct 12366464 GATACTATTGACAATGTTAAGGCCAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAG 12366523 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || ||||| || || ||| | || ||| ||| ||| | ||||||||||| Sbjct 12366524 CAAAGGCTGATTTTTGCTGGAAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTACAAC 12366583 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||||||| | ||| | || |||||| | || || ||| Sbjct 12366584 ATCCAGAAGGAATCCACCCTTCATCTTGTCTTGCGACTTCGTGGTGGT 12366631 Score = 123 bits (136), Expect = 2e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||||||||| || || || ||||| |||| || || ||| | || || || || || | Sbjct 8017439 AAAGATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATAACCCTCGAGGTTGAGTC 8017498 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | ||| | ||||| || || ||||||||||| || |||||||| || Sbjct 8017499 TTCAGACACAATCGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCTGA 8017558 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || |||||||| || || ||||| || ||||| || ||| |||||| || |||| || Sbjct 8017559 CCAGCAACGTCTCATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACTCTCGCCGACTA 8017618 Query 22395 CAACATTCAAAAAGAATCCAC 22415 |||||| || |||||||| || Sbjct 8017619 CAACATCCAGAAAGAATCAAC 8017639 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||||||||| || | || || || || | ||| | || || |||| | | Sbjct 12366632 ATGCAGATTTTTGTTAAGACGCTTACAGGCAAGACCATTACTTTGGAGGTAGAAAGCTCA 12366691 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || || |||||||||||||||||||| || || || Sbjct 12366692 GACACAATTGACAATGTGAAGGCCAAGATACAAGACAAGGAGGGTATTCCTCCAGACCAG 12366751 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || |||||||| || ||| | || ||| ||| ||| | ||||||||||| Sbjct 12366752 CAAAGGTTGATTTTTGCCGGAAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTACAAC 12366811 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||||||| | ||| | || | || ||| | ||||| Sbjct 12366812 ATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGG 12366858 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||||||||| |||||||| | | || || || || || ||||| ||||| || | Sbjct 12365946 AGATGCAAATCTTTGTTAAGGCGCTTACAGGCAAGACCGTTACTCTCGAAGTTGAGAGTT 12366005 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | |||||| | ||| || | || || |||||||| ||||| || || ||| | || | Sbjct 12366006 CAGATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATCCCATCAGACC 12366065 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| || ||||| || || ||| | |||||| || ||| | | ||||||| Sbjct 12366066 AGCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGATGGGCGTACCCTTGCTGATTACA 12366125 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427 |||| ||||| || |||||| | ||||| || Sbjct 12366126 ACATCCAAAAGGAGTCCACCCTCCATTTGGT 12366156 Score = 82.4 bits (90), Expect = 6e-11 Identities = 161/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | ||||| || || | || | || || |||| | Sbjct 12367316 ATGCAAATCTTTGTGAAGACGCTGACCGGAAAGACCATTACCTTGGAGGTAGAAAGTTCA 12367375 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || |||||| || || |||||||| || ||||| ||||| Sbjct 12367376 GACACAATTGATAACGTGAAGGCAAAAATACAGGATAAGGAGGGAATCCCACCAGATCAG 12367435 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || || || |||||| | || | | || |||||| Sbjct 12367436 CAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTGCTGACTACAAC 12367495 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTTCCATTTT 22456 ||||| || || || || | ||| | |||||||| | ||||| || ||| ||||| Sbjct 12367496 ATTCAGAAGGAGTCTACTCTTCATCTTGTTTTGCGCCTTCGCGGTGGATTTTAATTTT 12367553 >seq4 Length=28907061 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||| || | ||||| || || |||| ||||| ||||| | | | Sbjct 27565227 ATGCAAATATTTGTTAAGACCCTCACCGGAAAGACAATCACCCTTGAGGTGGAGAGCTCT 27565286 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || ||||||||||| ||||| || ||||| || || Sbjct 27565287 GATACCATTGACAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCACCAGACCAG 27565346 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || || ||| | || ||| ||| ||| | | ||||||||| Sbjct 27565347 CAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCCGGACCTTAGCTGATTACAAC 27565406 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||||||||| | || | || |||||| | || || ||| Sbjct 27565407 ATCCAGAAAGAATCCACTCTTCACCTTGTCTTGCGACTTCGTGGTGGT 27565454 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 || |||||||||| || ||||| || | || || || || ||||||| ||||| || | Sbjct 27564994 TATAGATGCAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTGGAAGTTGAGA 27565053 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | |||||| | ||| || | || || |||||||| ||||| || || ||||| | Sbjct 27565054 GTTCAGATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATCCCACCGG 27565113 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 | || || ||||| || ||||| || || ||| | ||||| || ||| | |||||| Sbjct 27565114 ACCAGCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGACGGGCGTACCCTTGCCGATT 27565173 Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||||| ||||| || || ||| | ||||| || Sbjct 27565174 ACAACATCCAAAAGGAGTCTACCCTCCATTTGGT 27565207 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| |||||| | || ||||| || | ||| | || || || | | | Sbjct 27565683 ATGCAGATTTTTGTGAAAACTCTTACTGGTAAGACAATAACTTTGGAGGTTGAGAGCTCA 27565742 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || || || ||||||||||| ||||| || ||||| Sbjct 27565743 GACACAATTGACAATGTGAAGGCTAAGATACAGGACAAGGAGGGCATTCCCCCGGATCAG 27565802 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || || ||| | || ||| ||| ||| | ||||||||||| Sbjct 27565803 CAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCCGAACCTTGGCCGATTACAAC 27565862 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||||||| | ||| | || | || || | |||||| Sbjct 27565863 ATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTCTGAGGGGAGGT 27565910 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| || || || || | || | || || |||| | Sbjct 27565911 ATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACCATTACATTGGAGGTAGAAAGTTCA 27565970 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| |||||| |||||||||||||| || ||||| ||||| Sbjct 27565971 GATACGATCGATAATGTCAAGGCAAAAATACAAGACAAGGAGGGAATCCCACCAGATCAG 27566030 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| ||||| || || |||||| | ||| | | || |||||| Sbjct 27566031 CAGAGGTTGATCTTTGCTGGCAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAAC 27566090 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||||| || || || || | || | || ||||| | || || || ||| Sbjct 27566091 ATTCAGAAGGAGTCTACTCTTCACCTTGTGTTGCGCCTTCGTGGTGGATTT 27566141 >seq28803 Length=52646 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||| || | ||||| || || |||| ||||| ||||| | | Sbjct 33767 ATGCAGATCTTTGTTAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTGGAGAGTTCT 33708 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || ||||||||||| ||||| || ||||| || || Sbjct 33707 GACACCATAGACAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCACCAGACCAG 33648 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || || ||| | || ||| | | ||| | | ||||||||| Sbjct 33647 CAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCAGGACCTTAGCTGATTACAAC 33588 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||||||||| | ||| | || |||||| | || |||||| Sbjct 33587 ATCCAGAAAGAATCCACTCTTCATCTTGTCTTGCGACTTCGTGGAGGT 33540 Score = 125 bits (138), Expect = 6e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 || || |||||||||| || ||||| || | || || || || ||||||||||||| | Sbjct 34003 TTATATAGATGCAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTTGAAGTTG 33944 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 | | | |||||| | ||| || | || || |||||||| ||||| || || |||| Sbjct 33943 AGAGTTCAGATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATCCCAC 33884 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 | || || || ||||| || ||||| || || ||| | ||||| || ||| | ||| Sbjct 33883 CGGACCAGCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGACGGGCGTACCCTTGCCG 33824 Query 22391 ATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||||| ||||| || || ||| | ||||| || Sbjct 33823 ATTACAACATACAAAAGGAGTCAACCCTTCATTTGGT 33787 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || ||| | || || || || | ||| | || || || | | | Sbjct 33539 ATGCAGATTTTTGTGAAGACTCTTACTGGCAAGACAATAACTTTGGAGGTTGAGAGCTCA 33480 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || |||||||||||||||||||| || || || || Sbjct 33479 GACACTATTGACAATGTTAAGGCTAAGATTCAAGACAAGGAGGGTATCCCCCCAGACCAG 33420 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || || ||| | || ||| || || | ||||||||||| Sbjct 33419 CAAAGGTTGATCTTTGCTGGAAAGCAGCTCGAAGATGGGCGAACTTTGGCCGATTACAAC 33360 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||||||| | ||| | || | || ||| | |||||| Sbjct 33359 ATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGGTTGAGGGGAGGT 33312 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||| | || ||||| ||| | ||| | || || || | | | Sbjct 12961 ATGCAGATTTTCGTCAAAACTCTTACTGGTAAGACGATAACTTTGGAGGTTGAGAGCTCA 13020 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || || || |||||| |||| ||||| | ||||| Sbjct 13021 GACACGATTGACAATGTGAAGGCTAAGATACAGGACAAGAAGGGCATTCCCTCGGATCAG 13080 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || || ||| | | ||| ||| ||| | | ||||||||| Sbjct 13081 CAAAGGTTGATTTTTGCTGGAAAGCAGCTCGTAGATGGCCGAACCTTAGCTGATTACAAC 13140 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||||||| | ||| | || | || || | |||||| Sbjct 13141 ATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTCTGAGGGGAGGT 13188 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || || | ||| | || || || | | | Sbjct 33311 ATGCAGATCTTTGTGAAGACATTGACAGGGAAGACCATTACTTTGGAGGTTGAGAGCTCA 33252 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | ||| || ||||| ||||||||||| ||||| || || || Sbjct 33251 GACACCATTGACAATGTAAAAGCTAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 33192 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || || ||| | || ||| | | ||| | | ||||| ||| Sbjct 33191 CAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACCTTGGCTGATTATAAC 33132 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAG 22444 || || || ||||||||| | ||| | || | || ||| | |||| Sbjct 33131 ATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAG 33086 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || || | ||| | || || |||| | Sbjct 32759 ATGCAGATCTTTGTGAAGACCTTGACAGGGAAGACCATTACTTTGGAGGTAGAAAGTTCT 32700 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| |||||| || |||||||| || || ||||| ||||| Sbjct 32699 GATACAATCGATAATGTCAAGGCAAAAATACAGGACAAGGAAGGAATCCCACCAGATCAG 32640 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || || || |||||| | ||| | | || |||||| Sbjct 32639 CAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAAC 32580 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| || ||||| || | ||| | || ||||| Sbjct 32579 ATTCAGAAGGAATCTACTCTTCATCTTGTGTTGCG 32545 >seq28626 Length=87040 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| ||||||| ||||| | || || || || ||| || || Sbjct 42591 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCC 42532 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | ||||| ||||| ||||||||||| || ||||| || ||||| Sbjct 42531 GATACCATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCTCCTGATCAG 42472 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| || || || || || ||| | || | | ||||| || Sbjct 42471 CAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGGACTCTTGCGGATTATAAT 42412 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| || || ||||||| ||| | | |||||||| || Sbjct 42411 ATCCAGAAAGAGTCTACGCTACATTTGGTTCTTAGGTTGCGCGGTGG 42365 >seq5139 Length=1344 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||| ||||| || ||||| || | || || || || || |||| ||||| || | Sbjct 1095 AGATACAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCGCTCTCGAAGTTGAGAGTT 1154 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | |||||| | ||| || | || || |||||||| ||||| || | ||||| || | Sbjct 1155 CAGATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGAACCCACCGGACC 1214 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| || ||||| || || ||| | |||||| || ||| | ||||||||| Sbjct 1215 AGCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGATGGGCGTACCCTTGCCGATTACA 1274 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427 |||| ||||| || |||||| | ||||| || Sbjct 1275 ACATCCAAAAGGAGTCCACCCTCCATTTGGT 1305 >seq28674 Length=75340 Score = 105 bits (116), Expect = 6e-18 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| ||||||| ||||| | || || || || ||| || || Sbjct 20592 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTTGAATCCTCC 20651 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | ||||| ||||| ||||| ||||| || |||||||| || ||| Sbjct 20652 GACACCATCGACAACGTCAAAGCCAAAATCCAAGATAAGGAAGGAATTCCACCAGACCAA 20711 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| ||||| | || || ||| ||| ||| Sbjct 20712 CAGCGTCTCATCTTCGCCGGAAAACAACTCGAAGACGGCCGNNNNNNNN----TTATAAC 20767 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||||||||| || | ||| | ||| | || | ||||| || Sbjct 20768 ATCCAAAAAGAATCAACGCTCCATCTCGTTCTCCGTCTCCGCGGCGG 20814 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| |||| || ||||| |||| || ||||| ||| | | Sbjct 20816 ATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACCATCACACTCGAAGTCGAATCTTCT 20875 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || ||| |||||||| || || || ||||| || |||||| Sbjct 20876 GACACAATCGACAACGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAA 20935 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || ||||| || || || || || ||| | || | | ||||| || Sbjct 20936 CAACGATTGATCTTTGCAGGAAAGCAATTGGAAGATGGTAGAACTCTTGCTGATTATAAT 20995 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || ||||| || || | ||||| ||| Sbjct 20996 ATCCAGAAAGAGTCTACGCTTCATTTGGTT 21025 >seq1 Length=28142018 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || || || ||||| || | || | || ||||| | | | Sbjct 1586409 ATGCAGATTTTTGTCAAGACCTTGACTGGTAAGACCATAACCTTGGAGGTGGAGAGCTCA 1586350 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || |||||||| || ||||| ||||| ||||| ||||| Sbjct 1586349 GATACCATTGATAATGTGAAGGCCAAAATTCAGGATAAGGAAGGTATCCCACCTGATCAG 1586290 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || || |||||||| |||||| | ||| | | || |||||| Sbjct 1586289 CAGAGGCTGATCTTCGCAGGGAAACAGTTGGAGGATGGAAGGACCCTTGCTGACTACAAC 1586230 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||||| || || |||||| | || | || | || | || || |||||| Sbjct 1586229 ATTCAGAAGGAGTCCACCCTTCACCTTGTGCTCCGTCTTCGTGGTGGTTTT 1586179 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | ||||| || || | |||||||| || |||| | | Sbjct 1586931 ATGCAAATCTTTGTGAAGACCCTTACCGGAAAGACTATTACTCTTGAGGTTGAAAGCTCT 1586872 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || ||||||||||| || || || || || || Sbjct 1586871 GACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAG 1586812 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCAC 22382 || | | || |||||||| || ||| | |||||| ||| || Sbjct 1586811 CAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGTAC 1586768 >seq6 Length=22682783 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| ||||| || ||||| |||||||| ||||| |||| || || || || | Sbjct 2585628 AAACATGCAGATTTTCGTCAAAACCTTAACCGGGAAAACCATCACCCTCGAGGTTGAGAG 2585687 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTA 22324 || ||| || | ||| || ||||| || |||||||||||||| |||| Sbjct 2585688 CAGCGACACAATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTA 2585737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419528237147815