Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq28220 93.3 9e-14 seq28181 91.5 3e-13 seq4 91.5 3e-13 seq38686 89.7 1e-12 seq3 89.7 1e-12 seq38711 87.8 4e-12 seq28078 87.8 4e-12 seq23410 87.8 4e-12 seq7 87.8 4e-12 seq6 87.8 4e-12 seq5 87.8 4e-12 seq2 87.8 4e-12 >seq28220 Length=91516 Score = 93.3 bits (102), Expect = 9e-14 Identities = 197/292 (67%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 |||||| | |||| ||||| || | ||||| | ||| | | | || |||||| Sbjct 70575 GACTTCGTTAACAAAGAGCTTATATTGTTCTCAATGGCAGATCTCCAAAGGTCCATTCCC 70634 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCG--CATTCAAGC 218635 | |||| |||||||| || || || | || || ||||| | | |||| ||| Sbjct 70635 TCCATGGTTGATGGCCTTAAACCTGGTCAAAGGAAAAT--TCTTTTCTGTTCATTTAAGA 70692 Query 218636 GGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTG 218695 || |||| |||||||||| || | || || |||||||| || || |||| Sbjct 70693 AAAAGTTGGTCAAAGAAATTAAAGTTGGGCAATTCATAGGTTATGTGTCTGAGCACTCTG 70752 Query 218696 GCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATG 218755 || || || |||||||| ||||| | | ||| | || ||||||||||||| || Sbjct 70753 CTTATCACCATGGTGAGCAAAGTCTTGCTAGCACAATTATTGGAATGGCACAGGACTTTG 70812 Query 218756 TGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCG 218807 | |||||||||||||| || | || || || ||||| |||||| |||| Sbjct 70813 TCGGCAGTAACAACATCAATCTTCTCAAACCAAATGGTCAATTTGGTACTCG 70864 >seq28181 Length=101328 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 9784 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 9843 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 9844 AGCCCCAC 9851 >seq4 Length=28907061 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 4217171 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 4217230 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 4217231 AGCCCCAC 4217238 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 21078034 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 21077975 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 21077974 AGCCCCAC 21077967 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 27783345 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 27783286 Query 142563 CCCCAC 142568 |||||| Sbjct 27783285 CCCCAC 27783280 >seq38686 Length=48611 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 41993 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 42052 Query 142562 GCCCCAC 142568 ||||||| Sbjct 42053 GCCCCAC 42059 >seq3 Length=31061273 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 26692228 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 26692169 Query 142562 GCCCCAC 142568 ||||||| Sbjct 26692168 GCCCCAC 26692162 Score = 84.2 bits (92), Expect = 4e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 || ||| ||| ||||||||| |||||||||| || ||||||| || ||||||||||||| Sbjct 10236074 AGGTAGTCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 10236133 Query 142559 CGAGCCCCA 142567 ||||||||| Sbjct 10236134 CGAGCCCCA 10236142 >seq38711 Length=45949 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 18313 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 18254 Query 142563 CCCCAC 142568 |||||| Sbjct 18253 CCCCAC 18248 >seq28078 Length=136442 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 47755 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 47814 Query 142563 CCCCAC 142568 |||||| Sbjct 47815 CCCCAC 47820 >seq23410 Length=814 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 570 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 629 Query 142563 CCCCAC 142568 |||||| Sbjct 630 CCCCAC 635 >seq7 Length=30551617 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 10663583 ATTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 10663524 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 10663523 AGCCCCAC 10663516 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 3859473 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3859532 Query 142564 CCCAC 142568 ||||| Sbjct 3859533 CCCAC 3859537 >seq6 Length=22682783 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 13893323 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 13893264 Query 142563 CCCCAC 142568 |||||| Sbjct 13893263 CCCCAC 13893258 >seq5 Length=15272566 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 9191510 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 9191451 Query 142563 CCCCAC 142568 |||||| Sbjct 9191450 CCCCAC 9191445 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 11286406 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 11286465 Query 142563 CCCCAC 142568 |||||| Sbjct 11286466 CCCCAC 11286471 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 8340424 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8340365 Query 142564 CCCAC 142568 ||||| Sbjct 8340364 CCCAC 8340360 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 9519247 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9519306 Query 142564 CCCAC 142568 ||||| Sbjct 9519307 CCCAC 9519311 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 11009542 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 11009483 Query 142564 CCCAC 142568 ||||| Sbjct 11009482 CCCAC 11009478 >seq2 Length=32560536 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 31121471 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 31121412 Query 142563 CCCCAC 142568 |||||| Sbjct 31121411 CCCCAC 31121406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027322531171891