Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 9e-15 seq28674 91.5 1e-13 seq1 91.5 1e-13 seq28803 89.7 4e-13 seq4 89.7 4e-13 seq9364 86.0 4e-12 >seq3 Length=31061273 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||| || | || |||||||| ||||| |||| || | || Sbjct 12366404 ATGCAGATTTTTGTTAAGACGCTTACAGGCAAAACGATTACTTTGGAGGTTGAGAGCTCA 12366463 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| || ||| || || |||||| | || | |||| Sbjct 12366464 GATACTATTGACAATGTTAAGGCCAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAG 12366523 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || || || |||||||| || || || |||||| ||| ||||||||||||| Sbjct 12366524 CAAAGGCTGATTTTTGCTGGAAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTACAAC 12366583 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACG 22048 || ||||||||||| || |||||| | || || || Sbjct 12366584 ATCCAGAAGGAATCCACCCTTCATCTTGTCTTGCG 12366618 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || || ||||||||| |||| ||| || Sbjct 12367316 ATGCAAATCTTTGTGAAGACGCTGACCGGAAAGACCATTACCTTGGAGGTAGAAAGTTCA 12367375 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||| |||||| ||||| ||||| | || | | || Sbjct 12367376 GACACAATTGATAACGTGAAGGCAAAAATACAGGATAAGGAGGGAATCCCACCAGATCAG 12367435 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || ||| | || ||| || ||| | || || ||||| Sbjct 12367436 CAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTGCTGACTACAAC 12367495 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAAT 22068 ||||||||||| |||||||||||| | || || || | || || |||| ||||| Sbjct 12367496 ATTCAGAAGGAGTCTACTCTTCATCTTGTTTTGCGCCTTCGCGGTGGATTTTAAT 12367550 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||| || | || ||||| |||||||| |||| ||| | || Sbjct 12366632 ATGCAGATTTTTGTTAAGACGCTTACAGGCAAGACCATTACTTTGGAGGTAGAAAGCTCA 12366691 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || || || || |||||| | ||| | |||| Sbjct 12366692 GACACAATTGACAATGTGAAGGCCAAGATACAAGACAAGGAGGGTATTCCTCCAGACCAG 12366751 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || ||||| || || || || |||||| ||| ||||||||||||| Sbjct 12366752 CAAAGGTTGATTTTTGCCGGAAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTACAAC 12366811 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || |||||| | || | ||||| | ||||| Sbjct 12366812 ATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGG 12366858 >seq28674 Length=75340 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | ||||| |||| ||||||||||| || | ||| ||| | | Sbjct 20816 ATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACCATCACACTCGAAGTCGAATCTTCT 20875 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| ||| ||| |||||||| || | ||| | ||| Sbjct 20876 GACACAATCGACAACGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAA 20935 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | |||||||| || || ||| | |||||| | |||| | || ||||| ||| Sbjct 20936 CAACGATTGATCTTTGCAGGAAAGCAATTGGAAGATGGTAGAACTCTTGCTGATTATAAT 20995 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || ||||| || ||||| |||||| |||| | | ||||| || ||| Sbjct 20996 ATCCAGAAAGAGTCTACGCTTCATTTGGTTCTTAGGTTACGTGGTGGA 21043 Score = 82.4 bits (90), Expect = 5e-11 Identities = 143/207 (69%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || || || ||||| || || ||||| |||| ||| | Sbjct 21043 AATGCAGATTTTTGTGAAGACGTTGACGGGAAAGACGATTACTTTGGAGGTGGAGAGTTC 21102 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAA 21949 || || | | || | ||| || ||| ||||| ||||| | ||||| | Sbjct 21103 TGATACTATTGATAATGTGAAGGCGAAGATTCAGGATAAGGAGGGGATTCCACCTG---A 21159 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || ||| || | ||||||||||| ||||| || |||||| || ||| | || ||||| Sbjct 21160 TCAGCAGCGATTGATCTTTGCTGGTAAACAGCTTGAAGATGGAAGGACTCTTGCTGATTA 21219 Query 22010 CAATATTCAGAAGGAATCTACTCTTCA 22036 ||||||||||| |||||||| ||||| Sbjct 21220 TAATATTCAGAAAGAATCTACGCTTCA 21246 >seq1 Length=28142018 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || || || || || || ||||| ||| |||| ||| | || Sbjct 1586637 ATGCAGATATTTGTCAAGACTTTGACCGGTAAGACCATAACCTTGGAGGTGGAGAGCTCA 1586578 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || || ||||| || ||| | || | | || Sbjct 1586577 GACACCATTGACAATGTCAAGGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGATCAG 1586518 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | |||||||| ||||||||| | |||||| || || | || ||||||||| Sbjct 1586517 CAGAGGTTGATCTTTGCAGGCAAACAATTGGAAGATGGAAGGACCCTTGCGGATTACAAT 1586458 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || |||||||| || |||||||| Sbjct 1586457 ATCCAGAAGGAGTCCACTCTTCA 1586435 >seq28803 Length=52646 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||||||| | ||| | |||| ||||| || || |||||||| || ||||| ||| Sbjct 8528 GACAAAGAGGGTATCCCTCCAGACCAGCAGAGGCTCATTTTTGCTGGAAAGCAACTTGAA 8587 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| || |||||||||| || || ||||||||||| || |||||| | || | Sbjct 8588 GATGGCCGTACCTTGGCCGATTATAACATCCAGAAGGAATCCACCCTTCATCTTGTCCTT 8647 Query 22047 CGTTTACGAGGAGG 22060 ||||| | ||||| Sbjct 8648 CGTTTGAGGGGAGG 8661 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || ||||| || || || |||| || | || Sbjct 33539 ATGCAGATTTTTGTGAAGACTCTTACTGGCAAGACAATAACTTTGGAGGTTGAGAGCTCA 33480 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| || ||| || || |||||| | || | |||| Sbjct 33479 GACACTATTGACAATGTTAAGGCTAAGATTCAAGACAAGGAGGGTATCCCCCCAGACCAG 33420 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | ||||||||||| || || || |||||| |||| ||||||||||||| Sbjct 33419 CAAAGGTTGATCTTTGCTGGAAAGCAGCTCGAAGATGGGCGAACTTTGGCCGATTACAAC 33360 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || |||||| | || | || || | ||||| Sbjct 33359 ATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGGTTGAGGGGAGG 33313 >seq4 Length=28907061 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || || || |||||||| |||| ||| || Sbjct 27565911 ATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACCATTACATTGGAGGTAGAAAGTTCA 27565970 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | ||| |||||| || || ||||| | || | | || Sbjct 27565971 GATACGATCGATAATGTCAAGGCAAAAATACAAGACAAGGAGGGAATCCCACCAGATCAG 27566030 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | |||||||||||||| ||| | || ||| || || | || || ||||| Sbjct 27566031 CAGAGGTTGATCTTTGCTGGCAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAAC 27566090 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAA 22067 ||||||||||| ||||||||||| | || || || | || || |||| |||| Sbjct 27566091 ATTCAGAAGGAGTCTACTCTTCACCTTGTGTTGCGCCTTCGTGGTGGATTTTAA 27566144 >seq9364 Length=1264 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || ||||| || ||||| |||| || | || Sbjct 282 ATGCAGATTTTTGTGAAGACCCTTACTGGCAAGACTATTACTTTGGAGGTTGAGAGCTCA 223 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || || ||| || || |||||| | || | |||| Sbjct 222 GACACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATCCCCCCAGACCAG 163 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | ||||||||||| || || || |||||| |||| ||||||||||||| Sbjct 162 CAAAGGTTGATCTTTGCTGGAAAGCAGCTCGAAGATGGGCGAACTTTGGCCGATTACAAC 103 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || |||||| | || | ||||| | ||||| Sbjct 102 ATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGG 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357954356209054