Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq28674 125 6e-24 seq28626 107 2e-18 seq3 104 2e-17 seq1 95.1 1e-14 seq28803 86.0 5e-12 seq9364 86.0 5e-12 >seq28674 Length=75340 Score = 125 bits (138), Expect = 6e-24 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || ||||| || || | | ||| | ||| | ||| ||||||||||| ||||| ||| Sbjct 20817 ATGCCGCCGCGGAGACGGAGAACGAGATGGAGCGTTGATTCTTTTTGGATGTTATAANNN 20758 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||||| |||||||| || ||| ||||||||||||||||||| || Sbjct 20757 NNNNNCGGCCG----TCTTCGAGTTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGT 20702 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || || || ||| | | || | |||||||| |||||| Sbjct 20701 GGAATTCCTTCCTTATCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATTCA 20642 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | ||||||||||| || ||||| || || ||||||||| Sbjct 20641 ACCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATG 20591 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || || | ||| | || | |||||||||||| ||||| || ||||| Sbjct 21270 CCACCACGGAGCCTGAGAACAAGGTGAAGCGTAGATTCTTTCTGAATATTATAATCAGCA 21211 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||| | ||||||||| ||||||||||| |||| | ||||| || || || ||| Sbjct 21210 AGAGTCCTTCCATCTTCAAGCTGTTTACCAGCAAAGATCAATCGCTGCTGATCAGGTGGA 21151 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || || || |||||| || | | |||| || || | || || Sbjct 21150 ATCCCCTCCTTATCCTGAATCTTCGCCTTCACATTATCAATAGTATCAGAACTCTCCACC 21091 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | ||| || || |||| || || |||||||||||||| Sbjct 21090 TCCAAAGTAATCGTCTTTCCCGTCAACGTCTTCACAAAAATCTGCAT 21044 >seq28626 Length=87040 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| ||||||| |||||| ||||| || || || ||||| | ||| | |||||| Sbjct 42382 AACCAAATGTAGCGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTCCTCCCATCTTC 42441 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 | ||| || || || |||| | ||||| || || |||||||| ||||| ||||| Sbjct 42442 CAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGAATTCCTTCCTTGTCTTG 42501 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 || || ||| | | || | ||| |||| |||||| || || | ||| | ||||| Sbjct 42502 GATTTTGGCTTTGACGTTGTCGATGGTATCGGAGGATTCTACCTCTAGGGTTATGGTTTT 42561 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 |||||| || ||||| || || |||||||||| Sbjct 42562 GCCGGTTAGGGTTTTCACGAAGATCTGCATGG 42593 >seq3 Length=31061273 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| |||| ||| || | ||| | || ||||| || || |||||||||||| Sbjct 12366633 ATACCACCACGAAGTCGCAAGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCG 12366574 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| || || || ||||| | || || | || ||||| || Sbjct 12366573 GCCAAGGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAAAATCAGCCTTTGCTGGTCTGGG 12366514 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| |||||| || | | |||| || || | | || Sbjct 12366513 GGAATACCCTCCTTGTCTTGAATCTTGGCCTTAACATTGTCAATAGTATCTGAGCTCTCA 12366454 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||||||| || || || || |||||||||||||| Sbjct 12366453 ACCTCCAAAGTAATCGTTTTGCCTGTAAGCGTCTTAACAAAAATCTGCAT 12366404 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 ||||| ||||| |||| ||| || | ||| | || ||||| || || ||||||||||| Sbjct 12366405 ATACCACCACGAAGTCGCAAGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCA 12366346 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||| || || | ||| ||||| ||||| ||||| | || || | || ||||| || Sbjct 12366345 GCTAAT-GTCCTGCCATCCTCAAGCTGTTTTCCAGCAAAAATCAGCCTTTGCTGGTCTGG 12366287 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||| ||||| |||||| || | | ||| | || || | || Sbjct 12366286 TGGAATACCTTCCTTGTCTTGAATCTTGACCTTGACATTTTCTATCGTATCCGAACTCTC 12366227 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| || || || ||||| ||||| || ||||| || ||||| Sbjct 12366226 AACCTCAAGGGTGACGGTCTTTCCGGTGAGAGTCTTCACAAAGATTTGCAT 12366176 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || ||||| |||||||| ||||| || ||| || ||||||||| || || || Sbjct 12367285 CGTGGACTCTTTCTGAATGTTATAATCAGCCAAAGTCCGGCCATCTTCAAGCTGCTTTCC 12367226 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| | || | | || ||||| || ||||| ||||||||||| ||||| || Sbjct 12367225 AGCAAATATCAACCTTTGCTGGTCTGGGGGAATACCTTCTTTGTCCTGTATCTTGGTCTT 12367166 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| ||||| | | || || |||| ||| | || || ||||| ||||| Sbjct 12367165 CACATTGTCAATAGTGTCTGAGCTCTCTACCTCCAAGGTAATAGTCTTTCCGGTAAGAGT 12367106 Query 114365 TTTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 12367105 CTTCACGAAAATCTGCAT 12367088 >seq1 Length=28142018 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| | ||| | ||| || || || ||||| |||||||| Sbjct 1587158 ATACCTCCACGCAGACGGAGAACAAGATGAAGCGTGGACTCCTTCTGAATATTGTAATCA 1587217 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||||| | || || || ||| |||||||||| || ||||||||| Sbjct 1587218 GCAAGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCCGGA 1587277 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||| ||| | | || | |||||| | | || Sbjct 1587278 GGAATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCC 1587337 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || ||||| || ||||| || || || ||||| Sbjct 1587338 ACCTCAAGGGTGATGGTCTTTCCGGTGAGTGTTTTCACGAAGATTTGCAT 1587387 >seq28803 Length=52646 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||||||| || ||| || |||||| || || || ||| Sbjct 33343 GTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGCCCATCTTCGAGCTGCTTTCCA 33402 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | || ||||| || || || || || ||||| |||||| || Sbjct 33403 GCAAAGATCAACCTTTGCTGGTCTGGGGGGATACCCTCCTTGTCTTGAATCTTAGCCTTA 33462 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | | || || |||| || | || ||||| || ||||| Sbjct 33463 ACATTGTCAATAGTGTCTGAGCTCTCAACCTCCAAAGTTATTGTCTTGCCAGTAAGAGTC 33522 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 33523 TTCACAAAAATCTGCAT 33539 >seq9364 Length=1264 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||||||| || ||| || |||||| || || || ||| Sbjct 86 GTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGCCCATCTTCGAGCTGCTTTCCA 145 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | || ||||| || || || || || ||||| |||||| ||| Sbjct 146 GCAAAGATCAACCTTTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTAGCTTTC 205 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | | || || |||| || | || ||||| || || || Sbjct 206 ACATTGTCAATAGTGTCTGAGCTCTCAACCTCCAAAGTAATAGTCTTGCCAGTAAGGGTC 265 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 266 TTCACAAAAATCTGCAT 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419934443728212