Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq28226 89.7 1e-12 >seq28226 Length=90112 Score = 89.7 bits (98), Expect = 1e-12 Identities = 173/250 (69%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488 ||||| || || || |||||||| ||| ||||| || || || ||||||||||| Sbjct 34373 TTCTTTGCTGCTTCCGACGGCATTGTCTTGGAGAATCTTGCAGGAAGATTCATGAAAGAA 34432 Query 42489 GTGC-AGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAACGTGC 42546 || | |||| | |||||||| ||| |||||||| |||||||| || || ||||| | | Sbjct 34433 GTTCAAGTA-TCAGAGGCGCG-TGCTTTCTACGGATTCCAGATTGCGATCGAGAATATTC 34490 Query 42547 ACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACG 42606 | |||||| |||| || | | || || |||| ||| | || ||| || Sbjct 34491 ATTCTGAGATGTATAGTCTCTTGATTGAAACTTATATCCATGATTCTGTTGAGAAGAATC 34550 Query 42607 GGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCA 42666 | |||| | || || ||||| || || || || | ||||| || || ||||| | | Sbjct 34551 GTTTGTTTCACGCGATTGAGACTATTCCTTGTATTACAAAGAAAGCTGATTGGGCTATGA 34610 Query 42667 ACTGGATCGA 42676 | |||||||| Sbjct 34611 AATGGATCGA 34620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943878232623760