Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 3e-14 seq4 87.8 1e-12 >seq1 Length=28142018 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | ||| || || || |||||||||||| |||||||||||| |||||||| | Sbjct 1587160 ACCTCCACGCAGACGGAGAACAAGATGAAGCGTGGACTCCTTCTGAATATTGTAATCAG- 1587218 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 ||| ||| | |||| ||||| ||||| ||||| || || || || ||||| ||| | Sbjct 1587219 CAAGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCCGGAG 1587278 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGAT-TC 34076 | | | || |||||| | | || |||| | || | | |||| || | || Sbjct 1587279 GAATTCCTTCCTTGTCC-TGGATCTTGGCTTTGACGTTGTCGATGGTGTCAG-AGCTCTC 1587336 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || |||||||| ||||||||||| ||||||||||| Sbjct 1587337 CACCTCAAGGGTGATGGTCTTTCCGGTGAGTGTTTTCACGAAGATTTGCAT 1587387 >seq4 Length=28907061 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| ||||| || || || |||||||| ||| |||||||| ||||||||||| || Sbjct 27565910 ACCTCCCCTCAGACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGC 27565851 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| ||| | || || | ||||| || ||||| |||| | ||||||||| || Sbjct 27565850 CAAGGTTCGGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCCGGGGG 27565791 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 27565790 AATGCCCTCCTTGTCC 27565775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396873424478902