Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq28226 93.3 9e-14 seq2 86.0 1e-11 >seq28226 Length=90112 Score = 93.3 bits (102), Expect = 9e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 243511 GAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTA--TTG 243568 || || ||||| | || | |||||| ||||||| || |||| ||| |||| ||| Sbjct 34856 GACGCGGTTGAGATTGAGAGGGAATTTGTTTGCGAAGCGCTTCCTTGC--GCTTTGGTTG 34913 Query 243569 GCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCG 243628 | ||||| ||| | ||| | ||||| || || || || || || | | || | Sbjct 34914 GAATGAATGGTGATTTGATGAGTCAGTATATTGAGTTTGTTGCTGATAGGTTGTTGTGTG 34973 Query 243629 CGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTT 243688 |||||||| ||||||| | || || |||| || |||| | ||||| | |||| Sbjct 34974 AGCTTGGTTGTGAGAAAATTTATAATGTTCAGAATCCTTTTGATTGGATGGATTTGATTT 35033 Query 243689 CGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||| |||||||||||||| || || ||||| || | || ||||| Sbjct 35034 CGCTTCAGGGGAAAACTAACTTTTTTGAGAAGCGCGTTGGGGAATATCA 35082 >seq2 Length=32560536 Score = 86.0 bits (94), Expect = 1e-11 Identities = 300/461 (65%), Gaps = 18/461 (4%) Strand=Plus/Plus Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345 ||||||||||| | |||| || | | || ||||||||||| | ||||| || ||| Sbjct 19587235 TCATTTGCTGAAAGAATCGTTGCTTTTGCTTGTGTTGAAGGTATATTTTTTTCTGGAAGT 19587294 Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTG---TGATGCCTGGCCTCGGTCTGTCT 243402 || || || || || ||||| || ||| ||| | |||||||| | | | || Sbjct 19587295 TTTTGTGCAATTTTCTGGCTT---AAAAAACGTGGTTTAATGCCTGGTTTAACTTTTTCA 19587351 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTA-TGTATTC 243461 |||||| | || || ||||| || ||||| | |||| | | ||| | ||||| Sbjct 19587352 AACGAGCTTATTTCACGTGACGAAGGTCTTCATTGTGATTTCGCTT-GTTTACTTTATTC 19587410 Query 243462 AAAGCTCCAGAACAAGCTACCATTCGAAACG---GTCAAACAAATCATCACAGAAGCAGT 243518 ||| || ||| || ||| | || ||| || || || || || Sbjct 19587411 ---GCTTTTGAGAAAGAAACTTAGTGAAGAGCGTGTGAAAACTATTGTCCGTGATGCGGT 19587467 Query 243519 TGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTA--TTGGCATGAAC 243576 ||| | || | ||||| |||| || || |||| || |||| |||| |||||| Sbjct 19587468 TGAGATTGAGAGAGAATTTGTTTGTGAAGCGCTTCCTTGT--GCTTTGGTTGGAATGAAC 19587525 Query 243577 TCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGT 243636 |||| | ||| | ||||| || || || || || || | | || | ||||||| Sbjct 19587526 GGTGAATTGATGAGTCAGTATATTGAGTTTGTTGCTGATAGGTTATTGGGTGAGCTTGGT 19587585 Query 243637 TATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAA 243696 | || |||| | || || |||| || |||| | ||||| | ||||||||||| Sbjct 19587586 TGTGGGAAAATTTATAATGTTCAGAATCCTTTTGATTGGATGGAATTGATTTCGCTTCAG 19587645 Query 243697 GGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 |||||||||||||| || || ||||| || | || ||||| Sbjct 19587646 GGGAAAACTAACTTTTTTGAGAAGCGCGTTGGGGAGTATCA 19587686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102328183986850