Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3 87.8 2e-12 >seq3 Length=31061273 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 94993 CAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAA 95052 ||||| ||| ||||| || | |||||||||| ||||| | ||| |||||| Sbjct 3458738 CAGGGAATTCTTCAGCCTGATATGTGGGGTGTGACACCCTCCAATTTGTGGGACTGGCCT 3458797 Query 95053 GCTCTACGCGCTGATGTTATCAAACACGG-TGTGAAAAACGCGCTGCTTGTGGCCCCCAT 95111 || || || | |||| ||||||| |||| ||| | ||| | || ||||| ||||| || Sbjct 3458798 GCACTTCGGGA-GATGATATCAAAGACGGGTGTAAGAAATTCACTTCTTGTTGCCCCTAT 3458856 Query 95112 GCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTC 95171 ||| || || || || || || ||||||||||| |||| || ||||| | || || Sbjct 3458857 GCCAACTGCATCTACCAGTCAAATTCTTGGCAACAATGAGTGTTTTGAACCATATACTTC 3458916 Query 95172 CAACGTGTACAA 95183 ||| | ||||| Sbjct 3458917 TAACATCTACAA 3458928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494481707053960