Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq28626 131 1e-25
seq9364 131 1e-25
seq28803 107 1e-18
seq3 105 5e-18
seq28674 102 6e-17
seq4 102 6e-17
seq1 86.0 4e-12
>seq28626
Length=87040
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| ||||| || | ||| ||||| || ||||| ||||| || || || |||||
Sbjct 42365 CCACCGCGCAACCTAAGAACCAAATGTAGCGTAGACTCTTTCTGGATATTATAATCCGCA 42424
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | ||| | ||||| ||||| || || || | ||||| ||||| || || |||
Sbjct 42425 AGAGTCCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGA 42484
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|||||||||||||| |||||| ||| || | || || |||||| ||||||
Sbjct 42485 ATTCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTATCGGAGGATTCTACC 42544
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|||| ||| |||||||| || || || ||||| || || || |||||
Sbjct 42545 TCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 42591
>seq9364
Length=1264
Score = 131 bits (144), Expect = 1e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| ||||| ||||| || || ||||| |||||||||||| || | | | |||| ||
Sbjct 529 AACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGCAAGGGTCCGCCCGTCCTC 588
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| ||||| ||||| | ||||||||||| ||||| ||| || |||||||| ||
Sbjct 589 CAGCTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTG 648
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
||||||| || ||| | ||||| |||||| | | || || || | |||||||| ||
Sbjct 649 AATTTTGGCCTTAACATTGTCTATGGTATCGGAACTCTCAACTTCAAGAGTAATGGTCTT 708
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
||| || || || || ||||| ||||||||
Sbjct 709 ACCAGTGAGGGTCTTGACAAAGATTTGCAT 738
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008
||||| || | || || || | |||||| || || ||||| || ||||||||||| |||
Sbjct 284 CCACCACGAAGTCGCAAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGCT 343
Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068
|| | || | ||||| | || || ||||| | ||||| | || ||||| |||
Sbjct 344 AAG-GTCCTGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGG 402
Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
||||| || ||||| ||| ||| || ||| | ||||| || || | | || ||
Sbjct 403 GATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCCAC 462
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| | ||| ||||| || || || ||||| || ||||| |||||||||
Sbjct 463 CTCGAGGGTGATGGTCTTTCCAGTGAGAGTCTTCACAAAGATTTGCATA 511
Score = 86.0 bits (94), Expect = 4e-12
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
||||||||| || || || || |||||||||||| | | ||| | | ||||| | ||
Sbjct 79 ATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGCCCATCTTCGAGCTG 138
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
|| ||||| | ||||| | || ||||| || || || |||||||| ||| ||
Sbjct 139 CTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTT 198
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
||| ||| | || ||||| || | || || || || ||||| || || || ||
Sbjct 199 AGCTTTCACATTGTCAATAGTGTCTGAGCTCTCAACCTCCAAAGTAATAGTCTTGCCAGT 258
Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177
|| || || |||||||| ||||||
Sbjct 259 AAGGGTCTTCACAAAAATCTGCATA 283
>seq28803
Length=52646
Score = 107 bits (118), Expect = 1e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| ||||||||||| || || |||||||||||||||||| || | | | |||| ||
Sbjct 33787 ACCAAATGAAGGGTTGACTCCTTTTGTATGTTGTAATCGGCAAGGGTACGCCCGTCCTCC 33846
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| || || ||||| | |||| |||||| ||||| ||| || |||||||| || |
Sbjct 33847 AGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTGA 33906
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| ||| || ||| | ||||| ||||| | | || || || | || ||||| ||
Sbjct 33907 ATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCAAGAGTGATGGTCTTG 33966
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || || || ||||||||
Sbjct 33967 CCAGTGAGGGTCTTAACGAAGATTTGCAT 33995
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024
|| || | |||||| ||||| || || || |||||||| || || | || | ||
Sbjct 32548 AACACAAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCC 32607
Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084
|| ||||| || ||||| | ||||| | ||| || || ||| ||||||||||||||
Sbjct 32608 TCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCC 32667
Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144
||||| || ||| | || || ||||| | ||||||| || || ||||||||
Sbjct 32668 TGTATTTTTGCCTTGACATTATCGATTGTATCAGAACTTTCTACCTCCAAAGTAATGGTC 32727
Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| ||||||| || || ||||| || |||||
Sbjct 32728 TTCCCTGTCAAGGTCTTCACAAAGATCTGCAT 32759
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
||||| ||||| || || || |||||||| || || | || | || || |||||
Sbjct 38770 TGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAATTGC 38829
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | ||||| | ||| || || ||| |||||||||||||| |||||
Sbjct 38830 TTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGTATTTTT 38889
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
|| ||| | || || ||||| | ||||||| || || |||||||| || ||||||
Sbjct 38890 GCCTTGACATTATCGATTGTATCAGAACTTTCTACCTCCAATGTAATGGTCTTCCCTGTC 38949
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
| || || ||||| || |||||
Sbjct 38950 AACGTCTTCACAAAGATCTGCAT 38972
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081
|| || ||||| || ||||| | ||||| | ||| || || ||| ||||||||||||
Sbjct 8817 TCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTG 8758
Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141
|| ||||| || ||| | || || ||||| | ||||||| || || ||||||
Sbjct 8757 TCCTGTATTTTTGCCTTAACATTATCGATTGTATCTGAACTTTCTACCTCCAAAGTAATG 8698
Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || ||||||| ||| || ||||| || |||||
Sbjct 8697 GTCTTCCCTGTCAAAGTCTTCACAAAGATCTGCAT 8663
Score = 86.0 bits (94), Expect = 4e-12
Identities = 149/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTC 15023
|| || | |||||| || || ||||| || ||||||||||| ||| || | || | ||
Sbjct 33556 AAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGCTAAG-GTCCTGCCATC 33614
Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083
||| | || || ||||| | ||||| | || ||||| ||| ||||| || |||||
Sbjct 33615 TTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGGATTCCCTCTTTGTC 33674
Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143
||| ||| || ||| | ||||| || || | | || || || | ||| |||||
Sbjct 33675 TTGAATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCCACCTCAAGGGTGATGGT 33734
Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || || || || || ||||| || ||||||
Sbjct 33735 CTTTCCGGTGAGGGTCTTAACAAAGATCTGCATA 33768
Score = 82.4 bits (90), Expect = 5e-11
Identities = 141/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
||||||||| || || || || |||||||||||| | | ||| | | ||||| | ||
Sbjct 33336 ATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGCCCATCTTCGAGCTG 33395
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
|| ||||| | ||||| | || ||||| || || || |||||||| ||| ||
Sbjct 33396 CTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGGGGGATACCCTCCTTGTCTTGAATCTT 33455
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
|| ||| | || ||||| || | || || || || || || || || || ||
Sbjct 33456 AGCCTTAACATTGTCAATAGTGTCTGAGCTCTCAACCTCCAAAGTTATTGTCTTGCCAGT 33515
Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177
||||| || |||||||| ||||||
Sbjct 33516 AAGAGTCTTCACAAAAATCTGCATA 33540
>seq3
Length=31061273
Score = 105 bits (116), Expect = 5e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024
||||| | |||||| ||||| || || || |||||||| || ||| | || | ||
Sbjct 12367527 AAAACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCC 12367468
Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084
|| ||||| || ||||| | ||||| | ||| || || ||| ||||| ||||| ||
Sbjct 12367467 TCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTATCC 12367408
Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144
||||| || || | || || || || | ||||||| || |||||||||||
Sbjct 12367407 TGTATTTTTGCCTTCACGTTATCAATTGTGTCTGAACTTTCTACCTCCAAGGTAATGGTC 12367348
Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || ||||| || || ||||| |||||||||
Sbjct 12367347 TTTCCGGTCAGCGTCTTCACAAAGATTTGCATA 12367315
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008
||||| || | || || || | ||||||||| || || || || ||||||||||| |||
Sbjct 12366402 CCACCACGAAGTCGCAAGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCT 12366343
Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068
| | || | || || | ||||| ||||| | |||| | || ||||| |||
Sbjct 12366342 AATG-TCCTGCCATCCTCAAGCTGTTTTCCAGCAAAAATCAGCCTTTGCTGGTCTGGTGG 12366284
Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
||| ||||||||||| ||| ||| || ||| ||||||| ||||| | | || ||
Sbjct 12366283 AATACCTTCCTTGTCTTGAATCTTGACCTTGACATTTTCTATCGTATCCGAACTCTCAAC 12366224
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| | ||| | ||| || || || ||||| || ||||| |||||||||
Sbjct 12366223 CTCAAGGGTGACGGTCTTTCCGGTGAGAGTCTTCACAAAGATTTGCATA 12366175
Score = 96.9 bits (106), Expect = 2e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | || || || | ||||||||| || || || || ||||||||||||
Sbjct 12366630 CCACCACGAAGTCGCAAGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 12366571
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
| ||| | ||||| | || || ||||| | |||| | || ||||| |||
Sbjct 12366570 AAGGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGA 12366511
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| || |||||||| ||| ||| || ||| | || |||||||| | || ||
Sbjct 12366510 ATACCCTCCTTGTCTTGAATCTTGGCCTTAACATTGTCAATAGTATCTGAGCTCTCAACC 12366451
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || ||||| ||||| ||||| || || || |||||||| ||||||
Sbjct 12366450 TCCAAAGTAATCGTTTTGCCTGTAAGCGTCTTAACAAAAATCTGCATA 12366403
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| ||||| ||||| || || ||||| ||||||||||| || | | | | || ||
Sbjct 12366156 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGGGTACGCCCATCCTCC 12366097
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| || || ||||| | |||| |||||| ||||| ||| || |||||||| || |
Sbjct 12366096 AGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGATGGGATCCCTTCCTTATCTTGA 12366037
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| ||| || ||| | ||||| ||||| | | || || || | |||| ||| ||
Sbjct 12366036 ATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTAACGGTCTTG 12365977
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
||||| || | || ||||| ||||||||
Sbjct 12365976 CCTGTAAGCGCCTTAACAAAGATTTGCAT 12365948
Score = 91.5 bits (100), Expect = 1e-13
Identities = 145/208 (70%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
||||| || || ||||| || |||||||| ||| |||| | | | ||||| || ||
Sbjct 8017645 TGAAGAGTTGATTCTTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCATCTTCCAACTGC 8017586
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| || ||| | || | ||| || ||||| |||||||||||||||||| || |||
Sbjct 8017585 TTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTGGATCTTG 8017526
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
||| || | || || || || | || || || | ||| || || || |||||
Sbjct 8017525 GCTTTGACGTTGTCGATTGTGTCTGAAGACTCAACCTCGAGGGTTATCGTCTTCCCTGTT 8017466
Query 15154 AGAGTTTTTACAAAAATTTGCATATTTG 15181
|| ||||| || || || ||||| ||||
Sbjct 8017465 AGGGTTTTCACGAAGATCTGCATCTTTG 8017438
Score = 86.0 bits (94), Expect = 4e-12
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
||||||||| || || || || |||||||||||| | ||| | ||||| | ||
Sbjct 12366835 ATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCTTCCAGCTG 12366776
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
|| || || | ||||| | || ||||| ||||| || |||||||| || ||
Sbjct 12366775 CTTTCCGGCAAAAATCAACCTTTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGTATCTT 12366716
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
| || ||| | || || || || ||||||| || || |||||||| || |||||
Sbjct 12366715 GGCCTTCACATTGTCAATTGTGTCTGAGCTTTCTACCTCCAAAGTAATGGTCTTGCCTGT 12366656
Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177
|| || || |||||||| ||||||
Sbjct 12366655 AAGCGTCTTAACAAAAATCTGCATA 12366631
>seq28674
Length=75340
Score = 102 bits (112), Expect = 6e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || || || | ||| |||||||| ||||| ||||| || || || |||||
Sbjct 21042 CCACCACGTAACCTAAGAACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATCAGCA 20983
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| |||| | ||||| ||||| || || || | ||||| || ||||| || |||
Sbjct 20982 AGAGTTCTACCATCTTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGAGGA 20923
Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
|||||||| || || ||| ||||| || || | || || || || | ||| ||
Sbjct 20922 ATTCCTTCTTTATCTTGAATCTTTGC-CTTCACGTTGTCGATTGTGTCAGAAGATTCGAC 20864
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | || |||||||| || || || ||||| || || ||||||||
Sbjct 20863 TTCGAGTGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 20816
Score = 95.1 bits (104), Expect = 9e-15
Identities = 115/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 15020 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCT 15079
||||||| | |||||| || ||| | || | |||||||||||| ||||||||||||||
Sbjct 20748 CGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCT 20689
Query 15080 TGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAA 15139
| || |||||| ||| || | || || || ||| ||| || |||| ||| |
Sbjct 20688 TATCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTTA 20629
Query 15140 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
||||||| || || || ||||| || || || |||||
Sbjct 20628 TGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 20592
>seq4
Length=28907061
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| ||||| |||||||| || ||||| |||||||||||| || | | | |||| ||
Sbjct 27565207 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGCCCGTCCTCC 27565148
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| || || ||||| | |||| |||||| ||||| ||| || |||||||| || |
Sbjct 27565147 AGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTGA 27565088
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| ||| || ||| | ||||| ||||| | | || || || | || ||||| ||
Sbjct 27565087 ATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCCAGAGTGATGGTCTTG 27565028
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || || || ||||||||
Sbjct 27565027 CCAGTGAGGGTCTTAACGAAGATTTGCAT 27564999
>seq1
Length=28142018
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| | |||||| || || || || || || |||||||| ||| | || |||||||
Sbjct 1587178 AACAAGATGAAGCGTGGACTCCTTCTGAATATTGTAATCAGCAAGAGTCCTTCCGTCTTC 1587237
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
|| || || || ||| | || | ||| || ||||| |||||||||||||||||
Sbjct 1587238 CAACTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTG 1587297
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
|| ||| ||| || | || || || || | || || || | ||| ||||| ||
Sbjct 1587298 GATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTCTT 1587357
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || ||||| || || ||||||||
Sbjct 1587358 TCCGGTGAGTGTTTTCACGAAGATTTGCAT 1587387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357221904973535
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |