Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq28626 131 1e-25 seq9364 131 1e-25 seq28803 107 1e-18 seq3 105 5e-18 seq28674 102 6e-17 seq4 102 6e-17 seq1 86.0 4e-12 >seq28626 Length=87040 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| || | ||| ||||| || ||||| ||||| || || || ||||| Sbjct 42365 CCACCGCGCAACCTAAGAACCAAATGTAGCGTAGACTCTTTCTGGATATTATAATCCGCA 42424 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | ||| | ||||| ||||| || || || | ||||| ||||| || || ||| Sbjct 42425 AGAGTCCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGA 42484 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| |||||| ||| || | || || |||||| |||||| Sbjct 42485 ATTCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTATCGGAGGATTCTACC 42544 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| ||| |||||||| || || || ||||| || || || ||||| Sbjct 42545 TCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 42591 >seq9364 Length=1264 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| ||||| || || ||||| |||||||||||| || | | | |||| || Sbjct 529 AACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGCAAGGGTCCGCCCGTCCTC 588 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| ||||| | ||||||||||| ||||| ||| || |||||||| || Sbjct 589 CAGCTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTG 648 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||||| || ||| | ||||| |||||| | | || || || | |||||||| || Sbjct 649 AATTTTGGCCTTAACATTGTCTATGGTATCGGAACTCTCAACTTCAAGAGTAATGGTCTT 708 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || || || ||||| |||||||| Sbjct 709 ACCAGTGAGGGTCTTGACAAAGATTTGCAT 738 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| || | || || || | |||||| || || ||||| || ||||||||||| ||| Sbjct 284 CCACCACGAAGTCGCAAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGCT 343 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | || | ||||| | || || ||||| | ||||| | || ||||| ||| Sbjct 344 AAG-GTCCTGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGG 402 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||| || ||||| ||| ||| || ||| | ||||| || || | | || || Sbjct 403 GATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCCAC 462 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| ||||| || || || ||||| || ||||| ||||||||| Sbjct 463 CTCGAGGGTGATGGTCTTTCCAGTGAGAGTCTTCACAAAGATTTGCATA 511 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||||||| || || || || |||||||||||| | | ||| | | ||||| | || Sbjct 79 ATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGCCCATCTTCGAGCTG 138 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || ||||| | ||||| | || ||||| || || || |||||||| ||| || Sbjct 139 CTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTT 198 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| ||| | || ||||| || | || || || || ||||| || || || || Sbjct 199 AGCTTTCACATTGTCAATAGTGTCTGAGCTCTCAACCTCCAAAGTAATAGTCTTGCCAGT 258 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || || |||||||| |||||| Sbjct 259 AAGGGTCTTCACAAAAATCTGCATA 283 >seq28803 Length=52646 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||||||||| || || |||||||||||||||||| || | | | |||| || Sbjct 33787 ACCAAATGAAGGGTTGACTCCTTTTGTATGTTGTAATCGGCAAGGGTACGCCCGTCCTCC 33846 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | |||| |||||| ||||| ||| || |||||||| || | Sbjct 33847 AGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTGA 33906 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || ||| | ||||| ||||| | | || || || | || ||||| || Sbjct 33907 ATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCAAGAGTGATGGTCTTG 33966 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || || |||||||| Sbjct 33967 CCAGTGAGGGTCTTAACGAAGATTTGCAT 33995 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || | |||||| ||||| || || || |||||||| || || | || | || Sbjct 32548 AACACAAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCC 32607 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || ||||| || ||||| | ||||| | ||| || || ||| |||||||||||||| Sbjct 32608 TCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCC 32667 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| || ||| | || || ||||| | ||||||| || || |||||||| Sbjct 32668 TGTATTTTTGCCTTGACATTATCGATTGTATCAGAACTTTCTACCTCCAAAGTAATGGTC 32727 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||||| || || ||||| || ||||| Sbjct 32728 TTCCCTGTCAAGGTCTTCACAAAGATCTGCAT 32759 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| ||||| || || || |||||||| || || | || | || || ||||| Sbjct 38770 TGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAATTGC 38829 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | ||||| | ||| || || ||| |||||||||||||| ||||| Sbjct 38830 TTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGTATTTTT 38889 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || ||||| | ||||||| || || |||||||| || |||||| Sbjct 38890 GCCTTGACATTATCGATTGTATCAGAACTTTCTACCTCCAATGTAATGGTCTTCCCTGTC 38949 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | || || ||||| || ||||| Sbjct 38950 AACGTCTTCACAAAGATCTGCAT 38972 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 || || ||||| || ||||| | ||||| | ||| || || ||| |||||||||||| Sbjct 8817 TCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTG 8758 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || ||||| || ||| | || || ||||| | ||||||| || || |||||| Sbjct 8757 TCCTGTATTTTTGCCTTAACATTATCGATTGTATCTGAACTTTCTACCTCCAAAGTAATG 8698 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||||| ||| || ||||| || ||||| Sbjct 8697 GTCTTCCCTGTCAAAGTCTTCACAAAGATCTGCAT 8663 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTC 15023 || || | |||||| || || ||||| || ||||||||||| ||| || | || | || Sbjct 33556 AAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGCTAAG-GTCCTGCCATC 33614 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 ||| | || || ||||| | ||||| | || ||||| ||| ||||| || ||||| Sbjct 33615 TTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGGATTCCCTCTTTGTC 33674 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||| ||| || ||| | ||||| || || | | || || || | ||| ||||| Sbjct 33675 TTGAATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCCACCTCAAGGGTGATGGT 33734 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || ||||| || |||||| Sbjct 33735 CTTTCCGGTGAGGGTCTTAACAAAGATCTGCATA 33768 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||||||| || || || || |||||||||||| | | ||| | | ||||| | || Sbjct 33336 ATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGCCCATCTTCGAGCTG 33395 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || ||||| | ||||| | || ||||| || || || |||||||| ||| || Sbjct 33396 CTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGGGGGATACCCTCCTTGTCTTGAATCTT 33455 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| | || ||||| || | || || || || || || || || || || Sbjct 33456 AGCCTTAACATTGTCAATAGTGTCTGAGCTCTCAACCTCCAAAGTTATTGTCTTGCCAGT 33515 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || |||||||| |||||| Sbjct 33516 AAGAGTCTTCACAAAAATCTGCATA 33540 >seq3 Length=31061273 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| | |||||| ||||| || || || |||||||| || ||| | || | || Sbjct 12367527 AAAACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCC 12367468 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || ||||| || ||||| | ||||| | ||| || || ||| ||||| ||||| || Sbjct 12367467 TCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTATCC 12367408 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| || || | || || || || | ||||||| || ||||||||||| Sbjct 12367407 TGTATTTTTGCCTTCACGTTATCAATTGTGTCTGAACTTTCTACCTCCAAGGTAATGGTC 12367348 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || || ||||| ||||||||| Sbjct 12367347 TTTCCGGTCAGCGTCTTCACAAAGATTTGCATA 12367315 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| || | || || || | ||||||||| || || || || ||||||||||| ||| Sbjct 12366402 CCACCACGAAGTCGCAAGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCT 12366343 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 | | || | || || | ||||| ||||| | |||| | || ||||| ||| Sbjct 12366342 AATG-TCCTGCCATCCTCAAGCTGTTTTCCAGCAAAAATCAGCCTTTGCTGGTCTGGTGG 12366284 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||| ||||||||||| ||| ||| || ||| ||||||| ||||| | | || || Sbjct 12366283 AATACCTTCCTTGTCTTGAATCTTGACCTTGACATTTTCTATCGTATCCGAACTCTCAAC 12366224 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| | ||| || || || ||||| || ||||| ||||||||| Sbjct 12366223 CTCAAGGGTGACGGTCTTTCCGGTGAGAGTCTTCACAAAGATTTGCATA 12366175 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || || || | ||||||||| || || || || |||||||||||| Sbjct 12366630 CCACCACGAAGTCGCAAGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 12366571 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | ||| | ||||| | || || ||||| | |||| | || ||||| ||| Sbjct 12366570 AAGGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGA 12366511 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || |||||||| ||| ||| || ||| | || |||||||| | || || Sbjct 12366510 ATACCCTCCTTGTCTTGAATCTTGGCCTTAACATTGTCAATAGTATCTGAGCTCTCAACC 12366451 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| ||||| ||||| || || || |||||||| |||||| Sbjct 12366450 TCCAAAGTAATCGTTTTGCCTGTAAGCGTCTTAACAAAAATCTGCATA 12366403 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| ||||| || || ||||| ||||||||||| || | | | | || || Sbjct 12366156 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGGGTACGCCCATCCTCC 12366097 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | |||| |||||| ||||| ||| || |||||||| || | Sbjct 12366096 AGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGATGGGATCCCTTCCTTATCTTGA 12366037 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || ||| | ||||| ||||| | | || || || | |||| ||| || Sbjct 12366036 ATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTAACGGTCTTG 12365977 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || | || ||||| |||||||| Sbjct 12365976 CCTGTAAGCGCCTTAACAAAGATTTGCAT 12365948 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || ||||| || |||||||| ||| |||| | | | ||||| || || Sbjct 8017645 TGAAGAGTTGATTCTTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCATCTTCCAACTGC 8017586 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | || | ||| || ||||| |||||||||||||||||| || ||| Sbjct 8017585 TTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTGGATCTTG 8017526 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| || | || || || || | || || || | ||| || || || ||||| Sbjct 8017525 GCTTTGACGTTGTCGATTGTGTCTGAAGACTCAACCTCGAGGGTTATCGTCTTCCCTGTT 8017466 Query 15154 AGAGTTTTTACAAAAATTTGCATATTTG 15181 || ||||| || || || ||||| |||| Sbjct 8017465 AGGGTTTTCACGAAGATCTGCATCTTTG 8017438 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||||||| || || || || |||||||||||| | ||| | ||||| | || Sbjct 12366835 ATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCTTCCAGCTG 12366776 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || || | ||||| | || ||||| ||||| || |||||||| || || Sbjct 12366775 CTTTCCGGCAAAAATCAACCTTTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGTATCTT 12366716 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || || ||||||| || || |||||||| || ||||| Sbjct 12366715 GGCCTTCACATTGTCAATTGTGTCTGAGCTTTCTACCTCCAAAGTAATGGTCTTGCCTGT 12366656 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || || |||||||| |||||| Sbjct 12366655 AAGCGTCTTAACAAAAATCTGCATA 12366631 >seq28674 Length=75340 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || || | ||| |||||||| ||||| ||||| || || || ||||| Sbjct 21042 CCACCACGTAACCTAAGAACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATCAGCA 20983 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| ||||| || || || | ||||| || ||||| || ||| Sbjct 20982 AGAGTTCTACCATCTTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGAGGA 20923 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||| || || ||| ||||| || || | || || || || | ||| || Sbjct 20922 ATTCCTTCTTTATCTTGAATCTTTGC-CTTCACGTTGTCGATTGTGTCAGAAGATTCGAC 20864 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || |||||||| || || || ||||| || || |||||||| Sbjct 20863 TTCGAGTGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 20816 Score = 95.1 bits (104), Expect = 9e-15 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 15020 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCT 15079 ||||||| | |||||| || ||| | || | |||||||||||| |||||||||||||| Sbjct 20748 CGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCT 20689 Query 15080 TGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAA 15139 | || |||||| ||| || | || || || ||| ||| || |||| ||| | Sbjct 20688 TATCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTTA 20629 Query 15140 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||| || || || ||||| || || || ||||| Sbjct 20628 TGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 20592 >seq4 Length=28907061 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| |||||||| || ||||| |||||||||||| || | | | |||| || Sbjct 27565207 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGCCCGTCCTCC 27565148 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | |||| |||||| ||||| ||| || |||||||| || | Sbjct 27565147 AGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTGA 27565088 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || ||| | ||||| ||||| | | || || || | || ||||| || Sbjct 27565087 ATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCCAGAGTGATGGTCTTG 27565028 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || || |||||||| Sbjct 27565027 CCAGTGAGGGTCTTAACGAAGATTTGCAT 27564999 >seq1 Length=28142018 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | |||||| || || || || || || |||||||| ||| | || ||||||| Sbjct 1587178 AACAAGATGAAGCGTGGACTCCTTCTGAATATTGTAATCAGCAAGAGTCCTTCCGTCTTC 1587237 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || || || || ||| | || | ||| || ||||| ||||||||||||||||| Sbjct 1587238 CAACTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTG 1587297 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| ||| || | || || || || | || || || | ||| ||||| || Sbjct 1587298 GATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTCTT 1587357 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || || |||||||| Sbjct 1587358 TCCGGTGAGTGTTTTCACGAAGATTTGCAT 1587387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357221904973535