Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq28107 114 2e-20 seq1 91.5 2e-13 seq3 86.0 8e-12 >seq28107 Length=123132 Score = 114 bits (126), Expect = 2e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 7940 AGAGAACCACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTG 7999 || || || || || |||||||| || || | ||||| || || ||||| || || || Sbjct 15016 AGTGAGCCGCCGAATACACCAGCTACACCTAACATGTAAAACGGATGCATAAGAATATTA 14957 Query 8000 TGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCG 8059 ||||| || || || |||| ||| ||||||| ||||||||||| || ||||||||| | Sbjct 14956 TGCTCAGCCTGAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCA 14897 Query 8060 TCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACT 8119 || || || || ||||| | || |||| | ||| || ||| || || ||||| Sbjct 14896 TCTGAAAAGCTTCCCTGACCTATTGGGTAGATCAAGAAAACTGCAATAGCAGCTGCAACC 14837 Query 8120 GGAGCAGAGTATGCTACA 8137 ||||| || ||||| ||| Sbjct 14836 GGAGCTGAATATGCAACA 14819 >seq1 Length=28142018 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 10203 TCAGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAAC 10262 |||| | ||||| ||||| |||| | | || ||| ||| | || || || || Sbjct 46066 TCAGAAGAGTTCCTCCTCCTTGTGTGTGTAAATCACGGTGTCGGATTTCGGGTACGAGAC 46125 Query 10263 ACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTG 10322 ||| || ||||| |||| |||| || | ||||| || || |||||||| || Sbjct 46126 ACATGTGAGAAGATAACCCTTCTCGACTTGCTGCTCATCGAGAAAGGATTGATCAGACTG 46185 Query 10323 ATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGA 10382 ||| || | ||| || | | || ||| |||||| | || || |||||||||| ||| || Sbjct 46186 ATCAACGGAACCTGAAACTACTTGGCCGGCACAAGTAGAGCATGCACCAGCTCTGCATGA 46245 Query 10383 GTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTA 10427 ||| || || | || || |||||||| | |||||||||||| Sbjct 46246 GTAAGGTAGCTCCACTCCAGCATCTTCAGCTGAATCCAGAATGTA 46290 >seq3 Length=31061273 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 6362 ATGTTCTTGGTATAGAACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAA 6421 || || ||||| ||||| ||||| || || ||||| ||||||| | ||| ||||| ||| Sbjct 10151867 ATATTTTTGGTGTAGAAAGTCTCAAATTCAGGATCTTCCGCTGTGCGGATTTCTTGAGAA 10151926 Query 6422 ACAAAGTCATAAGCTCTAAGGTTAAGTGCAAGACCAA 6458 ||||||||||| || | ||||| || || ||||||| Sbjct 10151927 ACAAAGTCATAGGCACGTAGGTTCAGGGCCAGACCAA 10151963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621821117555440