Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq38667 95.1 1e-14 >seq38667 Length=153359 Score = 95.1 bits (104), Expect = 1e-14 Identities = 228/339 (67%), Gaps = 12/339 (4%) Strand=Plus/Minus Query 12734 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAA 12793 |||||| || ||| | || || || || ||||||| ||| | || | || || Sbjct 113479 GTCAAGAATGTCAGCCCTATTGGTTGCTGCAATGACAATGATCTCGGTATTACCCTCAAA 113420 Query 12794 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCAT 12853 |||||||| || ||||| ||||| |||| ||| ||||| | |||||||||| | Sbjct 113419 TCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCCCTTTCATCATTCTCTTC--- 113363 Query 12854 ACCACCCGCACTGC---GTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910 |||| || ||| |||| || || || |||||||| |||| ||||| ||||| Sbjct 113362 ACCAATTCCAGTGCCTCGTTGTCCTCCCACAGCATCAATTTCATCAACAAAAACAATACA 113303 Query 12911 CGGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 || ||||| ||| |||| || ||||| || |||| ||||| ||||| Sbjct 113302 AGGAGCGTTTTCTTTGGC--CTTCTTGAATATATCACGAACTCGAGAAGCACCAACACCA 113245 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACC 13027 ||||||||||| ||||| | | | | | |||| || || ||||| | |||||| Sbjct 113244 ACAAACATCTCAACAAACTCAGAACCTG-AGATTGAGAAAAACGGGACACCTGCTTCACC 113186 Query 13028 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 ||| || || ||| | || ||||| || ||||| || Sbjct 113185 CGCAATAGCCTTGGCTAATAGCGTCTTACCAGTCCCCGG 113147 Score = 95.1 bits (104), Expect = 1e-14 Identities = 228/339 (67%), Gaps = 12/339 (4%) Strand=Plus/Minus Query 12734 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAA 12793 |||||| || || | ||| || || || ||||||| || || || | || || Sbjct 118994 GTCAAGAATGTCGGCCCTGTTGGTTGCTGCAATGACAATGACCCCGGTATTACCCTCAAA 118935 Query 12794 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCAT 12853 |||||||| || ||||| ||||| || | ||| ||||| | |||||| ||| | Sbjct 118934 TCCATCCATTTCTGTCAAAAGTTGGTTAAGGGTCTGTTCCCTTTCATCGTTCCCTCC--- 118878 Query 12854 ACCACCCGCACTGC---GTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910 |||| || ||| ||||| | || || || |||||||| |||| ||||| ||||| Sbjct 118877 ACCAATTCCAGTGCCTCGTTGCCTTCCCACAGCATCAATTTCATCAACAAAAACAATACA 118818 Query 12911 CGGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 || ||| || ||| |||| || | ||| || |||| ||||| ||||| Sbjct 118817 AGGAGCATTCTCTTTGGC--CTTCTTGAATAAATCACGAACTCGAGAAGCACCAACACCG 118760 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACC 13027 ||||||||||| ||||| | | | | | |||| || || ||||| | |||||| Sbjct 118759 ACAAACATCTCAACAAACTCAGAACCTG-AGATTGAGAAAAACGGGACACCTGCTTCACC 118701 Query 13028 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 ||| || || ||| | || ||||| || |||||||| Sbjct 118700 CGCAATAGCCTTGGCTAATAGCGTCTTACCAGTCCCTGG 118662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613207724129160