Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq9364 82.4 9e-11 >seq1 Length=28142018 Score = 107 bits (118), Expect = 2e-18 Identities = 158/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||| || || | || |||||| ||||||||||| |||| | ||| || | Sbjct 1586944 ACGCAACACAAGGTGGAGGGTTGACTCCTTCTGGATATTGTAATCGGCCAAAGTACGGCC 1587003 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||| ||||| || ||||| | ||||||||| | || | | ||||| Sbjct 1587004 GTCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTT 1587063 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553 |||| |||||| ||||| ||| | | | ||||| ||| ||| || || | | Sbjct 1587064 GTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGCT---TTCAACCTCAAGGG 1587119 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||| || || || || || || || ||||| ||||| Sbjct 1587120 TGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATCTGCAT 1587159 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/211 (71%), Gaps = 9/211 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || |||||||| || | ||||| | |||| || | |||||| |||||||| Sbjct 1587196 CTCCTTCTGAATATTGTAATCAGCAAGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCGAA 1587255 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || |||||||| | || | | ||||||||| |||||| |||| ||| Sbjct 1587256 GATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCTTTGA-CGT 1587314 Query 46522 CGCC-ACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| ||||| || | |||||||| || || || || |||| Sbjct 1587315 TGTCGATGGTGTCAGAGCTC---TCCACCTCAAGGGTGATGGTCTTTCCGGTGAGTGTTT 1587371 Query 46578 TAACAAAGATTTGCATTTTGCACAAACAACA 46608 | || |||||||||| | |||| || || || Sbjct 1587372 TCACGAAGATTTGCA-TCTGCAGAATCAGCA 1587401 >seq9364 Length=1264 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || ||||| | || ||||| | || ||||| ||||| ||||| |||| Sbjct 56 CCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 115 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| ||| | || ||||||||||| || || || ||||| | |||||||| | || Sbjct 116 AAAGTTCGCCCATCTTCGAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGGGGG 175 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | |||||||||| ||||| || | | | | ||||| |||| || Sbjct 176 ATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCAATAGTGTCTGAGCTC---TCA 232 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || || || ||||| || || || || ||||| || ||||| Sbjct 233 ACCTCCAAAGTAATAGTCTTGCCAGTAAGGGTCTTCACAAAAATCTGCAT 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564962485940520