Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq28226 174 2e-38 seq2 140 4e-28 seq38667 125 9e-24 seq7 104 3e-17 seq4 102 1e-16 seq6 98.7 1e-15 seq3 91.5 2e-13 >seq28226 Length=90112 Score = 174 bits (192), Expect = 2e-38 Identities = 380/564 (67%), Gaps = 9/564 (2%) Strand=Plus/Plus Query 102060 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGT 102119 ||||| | ||| || ||||||||| | | ||| | || || | || |||| ||| Sbjct 34523 TATATCCATGATTCTGTTGAGAAGAATCGTTTGTTTCACGCGATTGAGACTATTCCTTGT 34582 Query 102120 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCT 102179 ||| ||||||||| |||||||||||||| ||| | ||| || || ||| |||||| Sbjct 34583 ATTACAAAGAAAGCTGATTGGGCTATGAAATGGATCGATTCA---TCTGATTCATTTGCT 34639 Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 || | || | || ||||| |||||||| ||||| || |||||||| ||||| || Sbjct 34640 GAAAGGATCGTTGCTTTTGCTTGTGTTGAAGGTATATTTTTCTCTGGAAGTTTCTGTGCA 34699 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 |||| |||||| || || || ||| | ||||| ||| | || || || |||||||| Sbjct 34700 ATTTTTTGGCTTAAAAAACGTGGTTTAATGCCTGGTTTAACTTTTTCAAATGAGCTTATT 34759 Query 102300 TCTCGTGACGAGGGACTCCACCAAGAGTTTGC--GGTGGAACTTTTCAAATTATTGCGTA 102357 || || ||||| ||||| || || ||||| | | || | ||| | ||| | | Sbjct 34760 TCACGCGACGAAGGACTTCATTGCGATTTTGCCTGTTTGATTTATTC--GCTTTTGAGGA 34817 Query 102358 TTAAACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAGG 102417 ||||| | ||| | | | | ||||| || || ||||||||||||| || Sbjct 34818 ATAAACTGAGTGAAGAGCGTGTGAAGACAATTGTGCGTGACGCGGTTGAGATTGAGAGGG 34877 Query 102418 GATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGATGTCCG 102477 ||| | | || || ||||| |||||| | | || |||||| ||| |||| Sbjct 34878 AATTTGTTTGCGAAGCGCTTCCTTGCGCTTTGGTTGGAATGAATGGTGATTTGATGAGTC 34937 Query 102478 AATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGG-GGTGCCTCCAATTTGG 102536 | |||||||||| ||| ||||||| |||||| || | || ||| ||||| Sbjct 34938 AGTATATTGAGTTTGTTGCTGATAGGTTGTTGTGTGAGCTTGGTTGTG-AGAAAATTTAT 34996 Query 102537 AACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTC 102596 || ||||||| ||||| | ||||| ||| || | ||||| || ||||| Sbjct 34997 AATGTTCAGAATCCTTTTGATTGGATGGATTTGATTTCGCTTCAGGGGAAAACTAACTTT 35056 Query 102597 TTCGAAAAGAGGGTTGGGGACTAT 102620 || || ||| | |||||||| ||| Sbjct 35057 TTTGAGAAGCGCGTTGGGGAATAT 35080 >seq2 Length=32560536 Score = 140 bits (154), Expect = 4e-28 Identities = 370/562 (66%), Gaps = 5/562 (1%) Strand=Plus/Plus Query 102060 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGT 102119 ||||| || ||| | ||||||||| | | ||| | || || | || |||| ||| Sbjct 19587127 TATATCAATGATTCTATTGAGAAGAATCGTTTGTTTCATGCAATTGAGACGATTCCGTGT 19587186 Query 102120 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCT 102179 || |||||||| |||||||||||||| ||| | ||| || || ||| |||||| Sbjct 19587187 ATCGCGAAGAAAGCTGATTGGGCTATGAAATGGATCGATTCA---TCTGATTCATTTGCT 19587243 Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 || || || | || ||||| |||||||| ||||| || || ||||| || || || Sbjct 19587244 GAAAGAATCGTTGCTTTTGCTTGTGTTGAAGGTATATTTTTTTCTGGAAGTTTTTGTGCA 19587303 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 |||| ||||| || || || ||| | ||||| ||| | || || ||||||||||| Sbjct 19587304 ATTTTCTGGCTTAAAAAACGTGGTTTAATGCCTGGTTTAACTTTTTCAAACGAGCTTATT 19587363 Query 102300 TCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTATTGCGTATT 102359 || |||||||| || || || || || || ||||| | ||| | | Sbjct 19587364 TCACGTGACGAAGGTCTTCATTGTGATTTCGCTTGTTTACTTTATTCGCTTTTGAGAAAG 19587423 Query 102360 AAACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAGGGA 102419 |||| | ||| | | | ||||||| || || ||||||||||||| | | Sbjct 19587424 AAACTTAGTGAAGAGCGTGTGAAAACTATTGTCCGTGATGCGGTTGAGATTGAGAGAGAA 19587483 Query 102420 TTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGATGTCCGAA 102479 || | | || || ||||| || ||| | | || ||||| |||| |||| | Sbjct 19587484 TTTGTTTGTGAAGCGCTTCCTTGTGCTTTGGTTGGAATGAACGGTGAATTGATGAGTCAG 19587543 Query 102480 TATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGG-GGTGCCTCCAATTTGGAA 102538 |||||||||| ||| ||||||| || ||| || | || ||| ||||| || Sbjct 19587544 TATATTGAGTTTGTTGCTGATAGGTTATTGGGTGAGCTTGGTTGTG-GGAAAATTTATAA 19587602 Query 102539 CTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTT 102598 ||||||| ||||| | ||||| ||| || | ||||| || ||||| || Sbjct 19587603 TGTTCAGAATCCTTTTGATTGGATGGAATTGATTTCGCTTCAGGGGAAAACTAACTTTTT 19587662 Query 102599 CGAAAAGAGGGTTGGGGACTAT 102620 || ||| | |||||||| ||| Sbjct 19587663 TGAGAAGCGCGTTGGGGAGTAT 19587684 >seq38667 Length=153359 Score = 125 bits (138), Expect = 9e-24 Identities = 234/338 (69%), Gaps = 12/338 (4%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977 ||||| || ||| | | ||| ||||| || ||||||| || | || | ||||| Sbjct 113478 TCAAGAATGTCAGCCCTATTGGTTGCTGCAATGACAATGATCTCGGTATTACCCTCAAAT 113419 Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037 |||||||| ||||||||||| ||||| | || ||||||| |||||||||| || | Sbjct 113418 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCCCTTTCATCATTCTCT---TCA 113362 Query 16038 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 ||| |||| | ||||| |||||| |||||||| ||||||| || || || || Sbjct 113361 CCAATTCCAGTGCCTCGTTGTCCTCCCACAGCATCAATTTCATCAACAAAAACAATACAA 113302 Query 16095 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152 || ||||| || |||| || | ||| || || || || || ||||||| Sbjct 113301 GGAGCGTTTTCTTTGGC--CTTCTTGAATATATCACGAACTCGAGAAGCACCAACACCAA 113244 Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 16211 |||||||||| ||||| | | | | | |||| || || |||||| | ||||||| Sbjct 113243 CAAACATCTCAACAAACTCAGAACCTG-AGATTGAGAAAAACGGGACACCTGCTTCACCC 113185 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||||| || ||| | || |||||||| || || || Sbjct 113184 GCAATAGCCTTGGCTAATAGCGTCTTACCAGTCCCCGG 113147 Score = 125 bits (138), Expect = 9e-24 Identities = 308/461 (67%), Gaps = 12/461 (3%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977 ||||| || || | | || ||||| || ||||||| | || || | ||||| Sbjct 118993 TCAAGAATGTCGGCCCTGTTGGTTGCTGCAATGACAATGACCCCGGTATTACCCTCAAAT 118934 Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037 |||||||| ||||||||||| ||||||| || ||||||| |||||| ||| || | Sbjct 118933 CCATCCATTTCTGTCAAAAGTTGGTTAAGGGTCTGTTCCCTTTCATCGTTCCCT---CCA 118877 Query 16038 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 ||| |||| | |||||| ||||||| |||||||| ||||||| || || || || Sbjct 118876 CCAATTCCAGTGCCTCGTTGCCTTCCCACAGCATCAATTTCATCAACAAAAACAATACAA 118817 Query 16095 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152 || ||| || || |||| || | ||| || || || || || ||||| | Sbjct 118816 GGAGCATTCTCTTTGGC--CTTCTTGAATAAATCACGAACTCGAGAAGCACCAACACCGA 118759 Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 16211 |||||||||| ||||| | | | | | |||| || || |||||| | ||||||| Sbjct 118758 CAAACATCTCAACAAACTCAGAACCTG-AGATTGAGAAAAACGGGACACCTGCTTCACCC 118700 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271 ||||| || ||| | || |||||||| || ||||| ||| | || || | ||| Sbjct 118699 GCAATAGCCTTGGCTAATAGCGTCTTACCAGTCCCTGGGGGACCAACAAGAAGAACTCCT 118640 Query 16272 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATC 16331 ||| || || || | | | | |||||||| | || ||||| || || | | Sbjct 118639 TTTGGTATGCGAGCCCCGATAGTAGTGAACCTCTCAGGCTTTTTCAGAAACTCGACTACC 118580 Query 16332 TCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 || || || | |||||| | || | ||| ||||||| Sbjct 118579 TCCATAAAATCCTGTTTGGCTTCATCTACCCCAGCAACATC 118539 >seq7 Length=30551617 Score = 104 bits (114), Expect = 3e-17 Identities = 197/283 (70%), Gaps = 14/283 (5%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||||||||||||||| ||||||||||| |||||||||||||||| ||||||||| | Sbjct 4917338 AAAACCATCCATCTCAGTCAAAAGCTGATTAATAGTTTGTTCCCTCTCATCATTCCC--- 4917282 Query 16034 CATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 |||| ||||| | | || | || || |||||||| |||||||| || || || Sbjct 4917281 ACCACCAAGTCCAGCTCCTCTCTGTCTCCCAACTGCATCAATTTCATCAATAAACACAAT 4917222 Query 16091 GCATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCA 16146 ||| || |||| || || ||||| | ||||| || || || | || || | Sbjct 4917221 GCAAGG--CGCCTTCGACTTCGCCTTCTCAAACAAATCCC-TA-ACCCTAGAAGCACCAA 4917166 Query 16147 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 16206 |||||||||||| |||||||| | | || | ||| | ||| || ||| || || Sbjct 4917165 CACCAACAAACAATTCCACAAACTCCGAAGCCGCACACGAAAAGAACGGCACACCAGCTT 4917106 Query 16207 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 |||| || | || | || | || ||||| || || || || Sbjct 4917105 CACCGGCTACCGCCCTCGCCAATAGCGTCTTTCCTGTTCCCGG 4917063 >seq4 Length=28907061 Score = 102 bits (112), Expect = 1e-16 Identities = 121/162 (75%), Gaps = 8/162 (5%) Strand=Plus/Plus Query 184557 TTGGAATA--GGTGCAAATGATGTTGCCAATGCATTCGCAACATCAGTTGGATCAGGTGC 184614 |||||||| ||||| ||||||||||| |||||| | | ||| ||||||||||| ||||| Sbjct 5889544 TTGGAATATTGGTGCGAATGATGTTGCAAATGCAATGGGAACTTCAGTTGGATCTGGTGC 5889603 Query 184615 TTTGAAAGTTAAGCACGCAG---TGCCACTCGCGGCTGTGTGTGAGTTTTCGGGGTCTCT 184671 |||| | ||| ||| || | || || || || |||| || ||||| ||| | | Sbjct 5889604 ATTGACACTTAGGCAAGCTGTTTTGACA---GCTGCAGTGTTGGAATTTTCAGGGGCATT 5889660 Query 184672 GTTTATGGGAAGTCATGTCGTAAAAACAATACGAAAAGGAAT 184713 ||| ||||||| ||||||| || ||||| | ||||| || Sbjct 5889661 GTTGATGGGAACTCATGTCACAAGTACAATGCAGAAAGGGAT 5889702 >seq6 Length=22682783 Score = 98.7 bits (108), Expect = 1e-15 Identities = 224/335 (67%), Gaps = 4/335 (1%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 |||||| || ||| | ||| || || || || |||| || ||| || | | ||| Sbjct 20869472 ATCAAGAATTTCAGGTCTATTAGTAGCAGCAATAACAATAACACCAGTATTACCACTAAA 20869531 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 ||||||||| || ||||| | ||| || | |||||||| | |||||||||| || Sbjct 20869532 ACCATCCATTTCAGTCAACAACTGATTCAATGTTTGTTCTCTTTCATCATTCCCTCCACC 20869591 Query 16037 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 16096 | ||| | || | || |||| || ||||||||||||||||| || | | || || Sbjct 20869592 AATACCTGTACCTCTCTGTCTTCCAACAGCATCAATCTCATCAATAAATATCAAACAAGG 20869651 Query 16097 TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACA 16154 | |||||| || | ||| | ||| | | || |||| || || ||||||||| Sbjct 20869652 TGAATTTTCTTTGGCCTTGTTAAACAAATCTCTT--ACTCTTGAAGCACCAACACCAACA 20869709 Query 16155 AACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCA 16214 |||||||| | || | || | || | | ||| || || || | ||| || ||| Sbjct 20869710 AACATCTCAATGAATTCTGAACCTGATAGTGAAAAGAATGGAACTTTTGCTTCTCCTGCA 20869769 Query 16215 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || ||| || || || ||||| || || ||||| Sbjct 20869770 ATTGCTTTTGCTAGTAGTGTCTTTCCTGTCCCTGG 20869804 >seq3 Length=31061273 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/205 (71%), Gaps = 16/205 (8%) Strand=Plus/Minus Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031 ||||| |||||||| ||||||||||| ||||| | || ||||| | ||| |||||| || Sbjct 6381363 TCAAATCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCGTCATTCCCT 6381304 Query 16032 GGCATACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAG 16085 ||||| | ||| | ||| |||| || |||||||| ||||||| ||| Sbjct 6381303 ------CCACCGATTCCTGTCCCTCTTTGTCTTCCAACAGCATCAATTTCATCAACAAAG 6381250 Query 16086 ACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGC 16143 || ||||| || ||| || ||| |||| || | ||| || ||||| || | Sbjct 6381249 ACAATGCAAGGAGCATTCTCTTTAGC--CTTCTTGAACAAATCACGGACACGAGAAGCAC 6381192 Query 16144 CCACACCAACAAACATCTCCACAAA 16168 | | ||||||||||||||| ||||| Sbjct 6381191 CAATACCAACAAACATCTCAACAAA 6381167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620439392356720