Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq28226 95.1 1e-14 seq2 91.5 2e-13 >seq28226 Length=90112 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGT-- 119552 |||||| || |||||| ||||| || || || || |||||||| |||| ||||| Sbjct 34792 GGCAAAATCGCAATGAAGTCCTTCGTCGCGTGAAATAAGCTCATT--TGAA--AAAGTTA 34737 Query 119553 --CCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGA 119610 |||||||| | || | ||| || |||||||| || ||||| ||||||||||| || | Sbjct 34736 AACCAGGCATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTTCCAGAGAAAA 34677 Query 119611 AGATGCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGA 119670 | || || || ||||| || ||||| | | | |||||||| | ||| |||| Sbjct 34676 ATATACCTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCAGATGAATCGA 34617 Query 119671 ACCACTTGAGAGCCCA 119686 ||| || | |||||| Sbjct 34616 TCCATTTCATAGCCCA 34601 >seq2 Length=32560536 Score = 91.5 bits (100), Expect = 2e-13 Identities = 132/184 (72%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGT----CCAGGCATGA 119562 |||||| ||||| || || || || ||||| || |||| ||||| |||||||| | Sbjct 19587384 ATGAAGACCTTCGTCACGTGAAATAAGCTCGTT--TGAA--AAAGTTAAACCAGGCATTA 19587329 Query 119563 GTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCA 119622 || | ||| || ||||| || || |||||||||||||||||||| || || || || | Sbjct 19587328 AACCACGTTTTTTAAGCCAGAAAATTGCACAAAAACTTCCAGAAAAAAATATACCTTCAA 19587269 Query 119623 CACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAG 119682 |||| || ||||| | | | |||||||| | ||| |||| ||| || | || Sbjct 19587268 CACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATCAGATGAATCGATCCATTTCATAG 19587209 Query 119683 CCCA 119686 |||| Sbjct 19587208 CCCA 19587205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588688498727800