Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq38667 145 9e-30 seq6 114 2e-20 seq7 109 6e-19 seq3 86.0 7e-12 >seq38667 Length=153359 Score = 145 bits (160), Expect = 9e-30 Identities = 236/336 (70%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || ||| | | ||| || || || ||||||| || | || | | ||||| Sbjct 113478 TCAAGAATGTCAGCCCTATTGGTTGCTGCAATGACAATGATCTCGGTATTACCCTCAAAT 113419 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 |||||||| ||||||||||||||||| | || ||||||| |||||||||| || | Sbjct 113418 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCCCTTTCATCATTCTCT---TCA 113362 Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| |||| | ||||| |||||| |||||||| ||||||| || |||||||| Sbjct 113361 CCAATTCCAGTGCCTCGTTGTCCTCCCACAGCATCAATTTCATCAACAAAAACAATACAA 113302 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || ||||| ||| | | || | ||| ||||| | || || ||||||||| Sbjct 113301 GGAGCGTTTTCTTTGGCCTTCTTGAATATATCACGAACTCGAGAAGCACCAACACCAACA 113242 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | | | | |||| || || |||||| | ||||||||| Sbjct 113241 AACATCTCAACAAACTCAGAACCTG-AGATTGAGAAAAACGGGACACCTGCTTCACCCGC 113183 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||| || ||| | || |||||||| || || || Sbjct 113182 AATAGCCTTGGCTAATAGCGTCTTACCAGTCCCCGG 113147 Score = 145 bits (160), Expect = 9e-30 Identities = 236/336 (70%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | || || || || ||||||| | || || | | ||||| Sbjct 118993 TCAAGAATGTCGGCCCTGTTGGTTGCTGCAATGACAATGACCCCGGTATTACCCTCAAAT 118934 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 |||||||| ||||||||||||||||||| || ||||||| |||||| ||| || | Sbjct 118933 CCATCCATTTCTGTCAAAAGTTGGTTAAGGGTCTGTTCCCTTTCATCGTTCCCT---CCA 118877 Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| |||| | |||||| ||||||| |||||||| ||||||| || |||||||| Sbjct 118876 CCAATTCCAGTGCCTCGTTGCCTTCCCACAGCATCAATTTCATCAACAAAAACAATACAA 118817 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || ||| || ||| | | || | ||| ||||| | || || ||||| ||| Sbjct 118816 GGAGCATTCTCTTTGGCCTTCTTGAATAAATCACGAACTCGAGAAGCACCAACACCGACA 118757 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | | | | |||| || || |||||| | ||||||||| Sbjct 118756 AACATCTCAACAAACTCAGAACCTG-AGATTGAGAAAAACGGGACACCTGCTTCACCCGC 118698 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||| || ||| | || |||||||| || ||||| Sbjct 118697 AATAGCCTTGGCTAATAGCGTCTTACCAGTCCCTGG 118662 >seq6 Length=22682783 Score = 114 bits (126), Expect = 2e-20 Identities = 225/333 (68%), Gaps = 0/333 (0%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| || ||| | ||| || || || || |||| || ||| || | | | ||| Sbjct 20869472 ATCAAGAATTTCAGGTCTATTAGTAGCAGCAATAACAATAACACCAGTATTACCACTAAA 20869531 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| || ||||| | || || | |||||||| | |||||||||| || Sbjct 20869532 ACCATCCATTTCAGTCAACAACTGATTCAATGTTTGTTCTCTTTCATCATTCCCTCCACC 20869591 Query 9344 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGG 9403 | ||| | || | || |||| || ||||||||||||||||| || | | ||| || Sbjct 20869592 AATACCTGTACCTCTCTGTCTTCCAACAGCATCAATCTCATCAATAAATATCAAACAAGG 20869651 Query 9404 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAA 9463 | |||||| ||| | | ||| | ||| | || ||| || || ||||||||||| Sbjct 20869652 TGAATTTTCTTTGGCCTTGTTAAACAAATCTCTTACTCTTGAAGCACCAACACCAACAAA 20869711 Query 9464 CATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAAT 9523 |||||| | || | || | || | | ||| || || || | ||| || ||||| Sbjct 20869712 CATCTCAATGAATTCTGAACCTGATAGTGAAAAGAATGGAACTTTTGCTTCTCCTGCAAT 20869771 Query 9524 GGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||| || || || ||||| || || ||||| Sbjct 20869772 TGCTTTTGCTAGTAGTGTCTTTCCTGTCCCTGG 20869804 >seq7 Length=30551617 Score = 109 bits (120), Expect = 6e-19 Identities = 288/435 (66%), Gaps = 16/435 (4%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| | |||| | ||| || || || | |||| || ||| | | | | ||| Sbjct 4917395 ATCAAGAACATCAGGTCTATTAGTAGCAGCCAAAACAATAACACCCGAATTACCAGAAAA 4917336 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 |||||||||||| |||||||| || |||||||||||||||| ||||||||| | Sbjct 4917335 ACCATCCATCTCAGTCAAAAGCTGATTAATAGTTTGTTCCCTCTCATCATTCCC---ACC 4917279 Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 |||| ||||| | | || | || || |||||||| |||||||| || ||||| || Sbjct 4917278 ACCAAGTCCAGCTCCTCTCTGTCTCCCAACTGCATCAATTTCATCAATAAACACAATGCA 4917219 Query 9401 TGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 || || ||| || | ||||| | ||| | |||||| || || |||| Sbjct 4917218 AGGCGCCTTCGACTTC----GCCTTCTCAAACAAATCCCTAACCCTAGAAGCACCAACAC 4917163 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516 ||||||||| |||||||| | | || | ||| | ||| || ||| || ||||| Sbjct 4917162 CAACAAACAATTCCACAAACTCCGAAGCCGCACACGAAAAGAACGGCACACCAGCTTCAC 4917103 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9576 | || | || | || | || ||||| || || || || | ||| | | ||| Sbjct 4917102 CGGCTACCGCCCTCGCCAATAGCGTCTTTCCTGTTCCCGG-TGGCCCAACCAAAAGACAC 4917044 Query 9577 CCCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACA 9635 || | |||||||| || || || ||| | ||||| | ||| | ||||| ||| Sbjct 4917043 CCTTTAGGAATCTTAGCACCTAAAGCAGTGTACTTATCAGGATTCTTCAAGAAATCAACA 4916984 Query 9636 ATCTCTTCCAATTCA 9650 | |||| |||||| Sbjct 4916983 ACTTCTTGTAATTCA 4916969 >seq3 Length=31061273 Score = 86.0 bits (94), Expect = 7e-12 Identities = 156/227 (69%), Gaps = 15/227 (7%) Strand=Plus/Minus Query 9258 ACAACAAT---ACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 |||||||| ||| || | | ||||| |||||||| ||||||||||||||||| | Sbjct 6381387 ACAACAATGACACCGGTATTACCCTCAAATCCATCCATTTCTGTCAAAAGTTGGTTGAGG 6381328 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTCCC 9368 || ||||| | ||| |||||| || ||||| | ||| | ||| |||| Sbjct 6381327 GTCTGTTCTCTTTCGTCATTCCCT------CCACCGATTCCTGTCCCTCTTTGTCTTCCA 6381274 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || |||||||| ||||||| |||||||| || || ||| || || | | || Sbjct 6381273 ACAGCATCAATTTCATCAACAAAGACAATGCAAGGAGCATTCTCTTTAGCCTTCTTGAAC 6381214 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 | ||| || || | || || | ||||||||||||||| ||||| Sbjct 6381213 AAATCACGGACACGAGAAGCACCAATACCAACAAACATCTCAACAAA 6381167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589692808247240