Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq38667 145 9e-30
seq6 114 2e-20
seq7 109 6e-19
seq3 86.0 7e-12
>seq38667
Length=153359
Score = 145 bits (160), Expect = 9e-30
Identities = 236/336 (70%), Gaps = 8/336 (2%)
Strand=Plus/Minus
Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284
||||| || ||| | | ||| || || || ||||||| || | || | | |||||
Sbjct 113478 TCAAGAATGTCAGCCCTATTGGTTGCTGCAATGACAATGATCTCGGTATTACCCTCAAAT 113419
Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344
|||||||| ||||||||||||||||| | || ||||||| |||||||||| || |
Sbjct 113418 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCCCTTTCATCATTCTCT---TCA 113362
Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401
||| |||| | ||||| |||||| |||||||| ||||||| || ||||||||
Sbjct 113361 CCAATTCCAGTGCCTCGTTGTCCTCCCACAGCATCAATTTCATCAACAAAAACAATACAA 113302
Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461
|| ||||| ||| | | || | ||| ||||| | || || |||||||||
Sbjct 113301 GGAGCGTTTTCTTTGGCCTTCTTGAATATATCACGAACTCGAGAAGCACCAACACCAACA 113242
Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520
|||||||| ||||| | | | | | |||| || || |||||| | |||||||||
Sbjct 113241 AACATCTCAACAAACTCAGAACCTG-AGATTGAGAAAAACGGGACACCTGCTTCACCCGC 113183
Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
||| || ||| | || |||||||| || || ||
Sbjct 113182 AATAGCCTTGGCTAATAGCGTCTTACCAGTCCCCGG 113147
Score = 145 bits (160), Expect = 9e-30
Identities = 236/336 (70%), Gaps = 8/336 (2%)
Strand=Plus/Minus
Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284
||||| || || | | || || || || ||||||| | || || | | |||||
Sbjct 118993 TCAAGAATGTCGGCCCTGTTGGTTGCTGCAATGACAATGACCCCGGTATTACCCTCAAAT 118934
Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344
|||||||| ||||||||||||||||||| || ||||||| |||||| ||| || |
Sbjct 118933 CCATCCATTTCTGTCAAAAGTTGGTTAAGGGTCTGTTCCCTTTCATCGTTCCCT---CCA 118877
Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401
||| |||| | |||||| ||||||| |||||||| ||||||| || ||||||||
Sbjct 118876 CCAATTCCAGTGCCTCGTTGCCTTCCCACAGCATCAATTTCATCAACAAAAACAATACAA 118817
Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461
|| ||| || ||| | | || | ||| ||||| | || || ||||| |||
Sbjct 118816 GGAGCATTCTCTTTGGCCTTCTTGAATAAATCACGAACTCGAGAAGCACCAACACCGACA 118757
Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520
|||||||| ||||| | | | | | |||| || || |||||| | |||||||||
Sbjct 118756 AACATCTCAACAAACTCAGAACCTG-AGATTGAGAAAAACGGGACACCTGCTTCACCCGC 118698
Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
||| || ||| | || |||||||| || |||||
Sbjct 118697 AATAGCCTTGGCTAATAGCGTCTTACCAGTCCCTGG 118662
>seq6
Length=22682783
Score = 114 bits (126), Expect = 2e-20
Identities = 225/333 (68%), Gaps = 0/333 (0%)
Strand=Plus/Plus
Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283
|||||| || ||| | ||| || || || || |||| || ||| || | | | |||
Sbjct 20869472 ATCAAGAATTTCAGGTCTATTAGTAGCAGCAATAACAATAACACCAGTATTACCACTAAA 20869531
Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343
||||||||| || ||||| | || || | |||||||| | |||||||||| ||
Sbjct 20869532 ACCATCCATTTCAGTCAACAACTGATTCAATGTTTGTTCTCTTTCATCATTCCCTCCACC 20869591
Query 9344 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGG 9403
| ||| | || | || |||| || ||||||||||||||||| || | | ||| ||
Sbjct 20869592 AATACCTGTACCTCTCTGTCTTCCAACAGCATCAATCTCATCAATAAATATCAAACAAGG 20869651
Query 9404 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAA 9463
| |||||| ||| | | ||| | ||| | || ||| || || |||||||||||
Sbjct 20869652 TGAATTTTCTTTGGCCTTGTTAAACAAATCTCTTACTCTTGAAGCACCAACACCAACAAA 20869711
Query 9464 CATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAAT 9523
|||||| | || | || | || | | ||| || || || | ||| || |||||
Sbjct 20869712 CATCTCAATGAATTCTGAACCTGATAGTGAAAAGAATGGAACTTTTGCTTCTCCTGCAAT 20869771
Query 9524 GGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
||| || || || ||||| || || |||||
Sbjct 20869772 TGCTTTTGCTAGTAGTGTCTTTCCTGTCCCTGG 20869804
>seq7
Length=30551617
Score = 109 bits (120), Expect = 6e-19
Identities = 288/435 (66%), Gaps = 16/435 (4%)
Strand=Plus/Minus
Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283
|||||| | |||| | ||| || || || | |||| || ||| | | | | |||
Sbjct 4917395 ATCAAGAACATCAGGTCTATTAGTAGCAGCCAAAACAATAACACCCGAATTACCAGAAAA 4917336
Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343
|||||||||||| |||||||| || |||||||||||||||| ||||||||| |
Sbjct 4917335 ACCATCCATCTCAGTCAAAAGCTGATTAATAGTTTGTTCCCTCTCATCATTCCC---ACC 4917279
Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400
|||| ||||| | | || | || || |||||||| |||||||| || ||||| ||
Sbjct 4917278 ACCAAGTCCAGCTCCTCTCTGTCTCCCAACTGCATCAATTTCATCAATAAACACAATGCA 4917219
Query 9401 TGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456
|| || ||| || | ||||| | ||| | |||||| || || ||||
Sbjct 4917218 AGGCGCCTTCGACTTC----GCCTTCTCAAACAAATCCCTAACCCTAGAAGCACCAACAC 4917163
Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516
||||||||| |||||||| | | || | ||| | ||| || ||| || |||||
Sbjct 4917162 CAACAAACAATTCCACAAACTCCGAAGCCGCACACGAAAAGAACGGCACACCAGCTTCAC 4917103
Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9576
| || | || | || | || ||||| || || || || | ||| | | |||
Sbjct 4917102 CGGCTACCGCCCTCGCCAATAGCGTCTTTCCTGTTCCCGG-TGGCCCAACCAAAAGACAC 4917044
Query 9577 CCCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACA 9635
|| | |||||||| || || || ||| | ||||| | ||| | ||||| |||
Sbjct 4917043 CCTTTAGGAATCTTAGCACCTAAAGCAGTGTACTTATCAGGATTCTTCAAGAAATCAACA 4916984
Query 9636 ATCTCTTCCAATTCA 9650
| |||| ||||||
Sbjct 4916983 ACTTCTTGTAATTCA 4916969
>seq3
Length=31061273
Score = 86.0 bits (94), Expect = 7e-12
Identities = 156/227 (69%), Gaps = 15/227 (7%)
Strand=Plus/Minus
Query 9258 ACAACAAT---ACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314
|||||||| ||| || | | ||||| |||||||| ||||||||||||||||| |
Sbjct 6381387 ACAACAATGACACCGGTATTACCCTCAAATCCATCCATTTCTGTCAAAAGTTGGTTGAGG 6381328
Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTCCC 9368
|| ||||| | ||| |||||| || ||||| | ||| | ||| ||||
Sbjct 6381327 GTCTGTTCTCTTTCGTCATTCCCT------CCACCGATTCCTGTCCCTCTTTGTCTTCCA 6381274
Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428
|| |||||||| ||||||| |||||||| || || ||| || || | | ||
Sbjct 6381273 ACAGCATCAATTTCATCAACAAAGACAATGCAAGGAGCATTCTCTTTAGCCTTCTTGAAC 6381214
Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475
| ||| || || | || || | ||||||||||||||| |||||
Sbjct 6381213 AAATCACGGACACGAGAAGCACCAATACCAACAAACATCTCAACAAA 6381167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589692808247240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |