Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq1 145 9e-30 seq38608 127 2e-24 seq7 96.9 4e-15 seq3 95.1 1e-14 seq2 87.8 2e-12 >seq1 Length=28142018 Score = 145 bits (160), Expect = 9e-30 Identities = 243/347 (70%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 181520 GGCTGGCTCACTGGCACTACTTTTGTTACGTCGTGGTACACCCACGGATTGGCGTCTTCC 181579 || ||| |||| || || || ||||| || || ||||| || || |||||||| |||| Sbjct 23237501 GGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTTCC 23237560 Query 181580 TACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGT 181639 || | || ||| ||| ||| | || ||||| || || || |||| | | | | | Sbjct 23237561 TATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAGCA 23237620 Query 181640 CATTCTCTTCTTCTACTTTGGGGTCCTGAAGCTCAGGGCGATTT--CGTCCGCTGGGTCC 181697 |||||| | | |||| ||||||||| |||| || | ||||| ||| | ||| | Sbjct 23237621 CATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGT--GTTGGTGTC 23237678 Query 181698 AACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTA 181757 || | || || | ||| ||||||| || || ||||| || |||| | || ||||||| Sbjct 23237679 AATTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTA 23237738 Query 181758 TGCTCAGGCAATTTGAACTTGCTCG-TCTAATCGGAATCCGACCCTACAATGCGATTGCT 181816 || | | ||||||||||||||| | ||| || | | || || || ||||| || | Sbjct 23237739 TGTTACGTCAATTTGAACTTGCTTGATCTGTTC-AATTGCGGCCTTATAATGCAATCACA 23237797 Query 181817 TTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCC 181863 || |||||||| | || ||| || || | |||||| || || ||||| Sbjct 23237798 TTCTCCGGTCCAAGTGTTGTTTTTGTTTATGTATTCCTGATTTATCC 23237844 >seq38608 Length=401930 Score = 127 bits (140), Expect = 2e-24 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 182259 TTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGA 182318 ||||||| |||||||| || || ||||||||| | ||| | ||||| || || || |||| Sbjct 348919 TTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTGAGA 348860 Query 182319 CGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCG 182378 | |||||||| || || |||||||| || |||||| | ||||| ||| | || | | Sbjct 348859 CTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAG 348800 Query 182379 ATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 |||| || ||||| ||| || | ||||||||||| || |||| | || ||||| || Sbjct 348799 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 348742 >seq7 Length=30551617 Score = 96.9 bits (106), Expect = 4e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171912 GACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGTTCC 171971 || || ||||| | || || ||||| ||||||||| || ||||| ||||| || || Sbjct 3659794 GATGCAGCAGAGAATGCAGGAGTTGAACTTCCATATTCGTGTCGTGCTGGTGCGTGCTCT 3659735 Query 171972 AGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTTGAT 172031 | ||||||||| || ||| |||| | ||||||||||| || || | || || Sbjct 3659734 ACCTGTGCTGGGAAGGTTGTTTCTGGTTCTGTAGATCAGTCTGATGGCTCATATCTCGAC 3659675 Query 172032 GATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTACAAGCGATTGT 172091 || | |||||| | | ||| || || || ||||||||||| ||||| || |||||| Sbjct 3659674 GACGGTCAAATAAATGAAGGTTTTGTGCTAACCTGTGTTGCCTATCCAACTTCAGATTGT 3659615 Query 172092 GTT 172094 ||| Sbjct 3659614 GTT 3659612 >seq3 Length=31061273 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 182241 TTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAG 182300 ||||||| || || ||||| ||||| ||||||||||| || ||||||||| | || | | Sbjct 10151963 TTGGTCTGGCCCTGAACCTACGTGCCTATGACTTTGTTTCTCAAGAAATCCGCACAGCGG 10151904 Query 182301 AAGACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAAT 182347 |||| || || || ||||| |||||||| || || ||| |||| ||| Sbjct 10151903 AAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTATCTTAAAT 10151857 >seq2 Length=32560536 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 171907 TTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCT 171966 |||| ||| ||| || |||| || |||| ||| || || ||| | || ||| | | Sbjct 25898680 TTCTTGACCATGCTGAGGAAGTTGGAATTGAACTTCCTTACTCATGCAGAGCTGGTTCTT 25898739 Query 171967 GTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCC 172026 |||| |||||||||||| ||| | ||||| || ||||| ||| ||||| | Sbjct 25898740 GTTCTTCTTGTGCTGGTAAAGTTGTTAATGGTAATGTTAATCAGGAAGATGGTTCTTTTC 25898799 Query 172027 TTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTACA 172082 |||||||||| || || || | ||| | ||||| || |||||||||| |||||| Sbjct 25898800 TTGATGATGAACAGATTGAAGGAGGTTGGGTTCTTACTTGTGTTGCTTTCCCTACA 25898855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610098842432040