Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq28107 145 9e-30 seq30663 134 2e-26 seq29563 114 1e-20 seq38608 104 3e-17 seq1 98.7 1e-15 >seq28107 Length=123132 Score = 145 bits (160), Expect = 9e-30 Identities = 149/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 169785 TGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGG 169844 ||||||||| || || || || | ||||| | || || ||||| | |||||| | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 169845 TCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTT 169904 |||||| || || ||||||||||| ||||| ||||| |||||||||||||||||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 169905 CGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGG 169964 || || || || |||||||| ||||| |||||||| || ||||| ||| ||||| || Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 169965 AATGTTCGGAGGATC 169979 | ||||| || || Sbjct 14999 TGTATTCGGCGGCTC 15013 >seq30663 Length=4160 Score = 134 bits (148), Expect = 2e-26 Identities = 185/257 (72%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 153718 TGATGCAACCTGTAGGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTG 153777 || || ||||| ||||||| ||| |||||||| ||| ||| | || || || | Sbjct 1815 TGTTGAAACCTCCTGGTGAGTTTGGAGCTGATATTGTTGTCGGTTCTGCTCAGAGATTCG 1756 Query 153778 GTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATA 153837 || |||| ||||| ||||| |||||||||||||| ||||| || || || | |||||| Sbjct 1755 GTGTTCCGATGGGTTATGGTGGTCCTCATGCTGCTTTCTTGGCTACTTCACAAGAGTATA 1696 Query 153838 AGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAGGTAATAAAGC 153895 |||| | ||| ||||| ||||| | | |||||| || ||| | ||||| ||| Sbjct 1695 AGAGGATGATGCCTGGAAGAATCATTGGTGTCAGT--GTTGATTCTTCTGGTAAGTCAGC 1638 Query 153896 ATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAA 153955 | || | || | || ||||| ||||||||||| | || || || || ||||| || Sbjct 1637 TTTGAGGATGGCTATGCAAACTAGGGAGCAGCATATTCGTAGGGATAAGGCTACCAGCAA 1578 Query 153956 CATCTGCACAGCTCAGG 153972 ||| ||||| ||||||| Sbjct 1577 CATTTGCACTGCTCAGG 1561 >seq29563 Length=4854 Score = 114 bits (126), Expect = 1e-20 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 169835 ACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCA 169894 ||||| |||||||||| || || ||||||||||| ||||| ||||| |||||||||| Sbjct 4284 ACCCAATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCCGGTACTTTCA 4343 Query 169895 ACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATG 169950 |||||||| | || || || | |||||||| ||||| |||||||| || |||||| Sbjct 4344 ACTTTATGATTGTATTTCAGGTTGAGCATAATATTCTTATGCATCCATTTCACATG 4399 >seq38608 Length=401930 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 171390 GCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTCGAGACTTTC 171449 || || || || || |||||||| || | ||||| ||||| || || || ||||||||| Sbjct 348914 GCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTGAGACTTTC 348855 Query 171450 TACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCAGTTGACCAA 171509 ||||| || ||||| || | || |||||||| | || |||||| | | || || Sbjct 348854 TACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAG 348795 Query 171510 CCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 171566 || ||||| ||| | ||||||| || || || ||||| | || ||||| |||||| Sbjct 348794 CCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 348738 >seq1 Length=28142018 Score = 98.7 bits (108), Expect = 1e-15 Identities = 204/304 (67%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 170623 GTGGTTGGTTCTTAGGGACTACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCCT 170682 ||||||||||| ||| || ||||| || || ||||||||||| ||||| | || | Sbjct 23237499 GTGGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTT 23237558 Query 170683 CATATCTTGAGGGATGTAACTTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGG 170742 | ||| | || || ||||||||| |||| || ||||| || || |||| | | | Sbjct 23237559 CCTATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAG 23237618 Query 170743 GTCATAGTCTTCTGTTCCTTTGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTAC 170802 ||| | | |||| || ||||| ||| ||||||| | ||| |||||| | Sbjct 23237619 CACATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGTGTTGGTGTC 23237678 Query 170803 AACTCGGAGGTTTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCA 170862 || | || ||| | |||| ||||| || | || || | || ||| | |||||||| | Sbjct 23237679 AATTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTA 23237738 Query 170863 TGCTCAGACAATTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCAT 170922 || | | |||||||| | || || ||| | | ||||| || ||| || ||| Sbjct 23237739 TGTTACGTCAATTTGAACTTGCTTGATCTGTTCAATTGCGGCCTTATAATGCAATCACAT 23237798 Query 170923 TCTC 170926 |||| Sbjct 23237799 TCTC 23237802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578930064511840