Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq28107 145 9e-30
seq30663 134 2e-26
seq29563 114 1e-20
seq38608 104 3e-17
seq1 98.7 1e-15
>seq28107
Length=123132
Score = 145 bits (160), Expect = 9e-30
Identities = 149/195 (76%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 169785 TGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGG 169844
||||||||| || || || || | ||||| | || || ||||| | |||||| | ||
Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878
Query 169845 TCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTT 169904
|||||| || || ||||||||||| ||||| ||||| |||||||||||||||||| |
Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938
Query 169905 CGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGG 169964
|| || || || |||||||| ||||| |||||||| || ||||| ||| ||||| ||
Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998
Query 169965 AATGTTCGGAGGATC 169979
| ||||| || ||
Sbjct 14999 TGTATTCGGCGGCTC 15013
>seq30663
Length=4160
Score = 134 bits (148), Expect = 2e-26
Identities = 185/257 (72%), Gaps = 4/257 (2%)
Strand=Plus/Minus
Query 153718 TGATGCAACCTGTAGGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTG 153777
|| || ||||| ||||||| ||| |||||||| ||| ||| | || || || |
Sbjct 1815 TGTTGAAACCTCCTGGTGAGTTTGGAGCTGATATTGTTGTCGGTTCTGCTCAGAGATTCG 1756
Query 153778 GTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATA 153837
|| |||| ||||| ||||| |||||||||||||| ||||| || || || | ||||||
Sbjct 1755 GTGTTCCGATGGGTTATGGTGGTCCTCATGCTGCTTTCTTGGCTACTTCACAAGAGTATA 1696
Query 153838 AGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAGGTAATAAAGC 153895
|||| | ||| ||||| ||||| | | |||||| || ||| | ||||| |||
Sbjct 1695 AGAGGATGATGCCTGGAAGAATCATTGGTGTCAGT--GTTGATTCTTCTGGTAAGTCAGC 1638
Query 153896 ATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAA 153955
| || | || | || ||||| ||||||||||| | || || || || ||||| ||
Sbjct 1637 TTTGAGGATGGCTATGCAAACTAGGGAGCAGCATATTCGTAGGGATAAGGCTACCAGCAA 1578
Query 153956 CATCTGCACAGCTCAGG 153972
||| ||||| |||||||
Sbjct 1577 CATTTGCACTGCTCAGG 1561
>seq29563
Length=4854
Score = 114 bits (126), Expect = 1e-20
Identities = 95/116 (82%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 169835 ACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCA 169894
||||| |||||||||| || || ||||||||||| ||||| ||||| ||||||||||
Sbjct 4284 ACCCAATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCCGGTACTTTCA 4343
Query 169895 ACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATG 169950
|||||||| | || || || | |||||||| ||||| |||||||| || ||||||
Sbjct 4344 ACTTTATGATTGTATTTCAGGTTGAGCATAATATTCTTATGCATCCATTTCACATG 4399
>seq38608
Length=401930
Score = 104 bits (114), Expect = 3e-17
Identities = 129/177 (73%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 171390 GCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTCGAGACTTTC 171449
|| || || || || |||||||| || | ||||| ||||| || || || |||||||||
Sbjct 348914 GCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTGAGACTTTC 348855
Query 171450 TACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCAGTTGACCAA 171509
||||| || ||||| || | || |||||||| | || |||||| | | || ||
Sbjct 348854 TACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAG 348795
Query 171510 CCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 171566
|| ||||| ||| | ||||||| || || || ||||| | || ||||| ||||||
Sbjct 348794 CCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 348738
>seq1
Length=28142018
Score = 98.7 bits (108), Expect = 1e-15
Identities = 204/304 (67%), Gaps = 0/304 (0%)
Strand=Plus/Plus
Query 170623 GTGGTTGGTTCTTAGGGACTACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCCT 170682
||||||||||| ||| || ||||| || || ||||||||||| ||||| | || |
Sbjct 23237499 GTGGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTT 23237558
Query 170683 CATATCTTGAGGGATGTAACTTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGG 170742
| ||| | || || ||||||||| |||| || ||||| || || |||| | | |
Sbjct 23237559 CCTATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAG 23237618
Query 170743 GTCATAGTCTTCTGTTCCTTTGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTAC 170802
||| | | |||| || ||||| ||| ||||||| | ||| |||||| |
Sbjct 23237619 CACATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGTGTTGGTGTC 23237678
Query 170803 AACTCGGAGGTTTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCA 170862
|| | || ||| | |||| ||||| || | || || | || ||| | |||||||| |
Sbjct 23237679 AATTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTA 23237738
Query 170863 TGCTCAGACAATTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCAT 170922
|| | | |||||||| | || || ||| | | ||||| || ||| || |||
Sbjct 23237739 TGTTACGTCAATTTGAACTTGCTTGATCTGTTCAATTGCGGCCTTATAATGCAATCACAT 23237798
Query 170923 TCTC 170926
||||
Sbjct 23237799 TCTC 23237802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578930064511840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |