Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= NC_015281.1
Length=179563
Score E
Sequences producing significant alignments: (Bits) Value
seq1 150 2e-31
seq38608 138 1e-27
seq32521 93.3 5e-14
>seq1
Length=28142018
Score = 150 bits (166), Expect = 2e-31
Identities = 246/351 (70%), Gaps = 10/351 (3%)
Strand=Plus/Plus
Query 169403 GGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTGGTACACCCACGGACTCGC---TTCC 169459
|| ||| |||| ||||| | ||||| ||||| ||||| || || ||| | || ||||
Sbjct 23237501 GGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTTCC 23237560
Query 169460 AGTTACTTAGAAGGCGCTAACTTCCTCACTGCTGCTGTCAGTACACCTGCTGACGCTATG 169519
|| || ||||| ||||||| | ||||| || ||| ||| |||| | | | |
Sbjct 23237561 ---TATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTA 23237617
Query 169520 GGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAAGGCGATTT--CGTTCGCTGGT 169577
| ||| || || | || || |||||||| ||||||| | ||||| ||| | ||||
Sbjct 23237618 GCACATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGT--GTTGGT 23237675
Query 169578 GTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTT 169637
||||||| |||||| | |||| ||||| || ||||| ||||| || | ||| || ||||
Sbjct 23237676 GTCAATTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTT 23237735
Query 169638 TCATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATCCGTCCTTATAATGCTATTG 169697
| ||| | | || |||||| | || | | || | || ||||||||||| ||
Sbjct 23237736 TTATGTTACGTCAATTTGAACTTGCTTGATCTGTTCAATTGCGGCCTTATAATGCAATCA 23237795
Query 169698 CATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTATCTACCCAC 169748
||||||| ||||| | || ||| ||||| ||| || || || || ||||
Sbjct 23237796 CATTCTCCGGTCCAAGTGTTGTTTTTGTTTATGTATTCCTGATTTATCCAC 23237846
>seq38608
Length=401930
Score = 138 bits (152), Expect = 1e-27
Identities = 139/181 (77%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 170139 ATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTG 170198
|| ||||||| || || ||||| ||| || ||| | ||||| |||||||| |||||||
Sbjct 348922 ATATTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTG 348863
Query 170199 AGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTG 170258
|||| |||||||||||||| || || || || ||||| ||||||| ||| |||| ||
Sbjct 348862 AGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTC 348803
Query 170259 CTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCAC 170318
||||| || ||||||||| | || ||||| || || ||||| || | || ||||| |
Sbjct 348802 AAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTC 348743
Query 170319 T 170319
|
Sbjct 348742 T 348742
>seq32521
Length=1850
Score = 93.3 bits (102), Expect = 5e-14
Identities = 87/111 (78%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 170138 AATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTT 170197
|| || ||||| || || ||||| ||| || ||| ||||| |||||||| ||||||
Sbjct 847 AAACTACGTGCCTATGACTTCGTTTCTCAAGAAATCCACGCAGCGGAAGATCCTGAATTT 788
Query 170198 GAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGG 170248
||||| |||||||||||||| || || || || ||||| ||||||| |||
Sbjct 787 GAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGG 737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 574193177893080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |