Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq1 150 2e-31 seq38608 138 1e-27 seq32521 93.3 5e-14 >seq1 Length=28142018 Score = 150 bits (166), Expect = 2e-31 Identities = 246/351 (70%), Gaps = 10/351 (3%) Strand=Plus/Plus Query 169403 GGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTGGTACACCCACGGACTCGC---TTCC 169459 || ||| |||| ||||| | ||||| ||||| ||||| || || ||| | || |||| Sbjct 23237501 GGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTTCC 23237560 Query 169460 AGTTACTTAGAAGGCGCTAACTTCCTCACTGCTGCTGTCAGTACACCTGCTGACGCTATG 169519 || || ||||| ||||||| | ||||| || ||| ||| |||| | | | | Sbjct 23237561 ---TATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTA 23237617 Query 169520 GGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAAGGCGATTT--CGTTCGCTGGT 169577 | ||| || || | || || |||||||| ||||||| | ||||| ||| | |||| Sbjct 23237618 GCACATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGT--GTTGGT 23237675 Query 169578 GTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTT 169637 ||||||| |||||| | |||| ||||| || ||||| ||||| || | ||| || |||| Sbjct 23237676 GTCAATTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTT 23237735 Query 169638 TCATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATCCGTCCTTATAATGCTATTG 169697 | ||| | | || |||||| | || | | || | || ||||||||||| || Sbjct 23237736 TTATGTTACGTCAATTTGAACTTGCTTGATCTGTTCAATTGCGGCCTTATAATGCAATCA 23237795 Query 169698 CATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTATCTACCCAC 169748 ||||||| ||||| | || ||| ||||| ||| || || || || |||| Sbjct 23237796 CATTCTCCGGTCCAAGTGTTGTTTTTGTTTATGTATTCCTGATTTATCCAC 23237846 >seq38608 Length=401930 Score = 138 bits (152), Expect = 1e-27 Identities = 139/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 170139 ATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTG 170198 || ||||||| || || ||||| ||| || ||| | ||||| |||||||| ||||||| Sbjct 348922 ATATTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTG 348863 Query 170199 AGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTG 170258 |||| |||||||||||||| || || || || ||||| ||||||| ||| |||| || Sbjct 348862 AGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTC 348803 Query 170259 CTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCAC 170318 ||||| || ||||||||| | || ||||| || || ||||| || | || ||||| | Sbjct 348802 AAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTC 348743 Query 170319 T 170319 | Sbjct 348742 T 348742 >seq32521 Length=1850 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 170138 AATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTT 170197 || || ||||| || || ||||| ||| || ||| ||||| |||||||| |||||| Sbjct 847 AAACTACGTGCCTATGACTTCGTTTCTCAAGAAATCCACGCAGCGGAAGATCCTGAATTT 788 Query 170198 GAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGG 170248 ||||| |||||||||||||| || || || || ||||| ||||||| ||| Sbjct 787 GAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGG 737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574193177893080