Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq38608 145 8e-30 seq1 141 1e-28 seq3 98.7 1e-15 >seq38608 Length=401930 Score = 145 bits (160), Expect = 8e-30 Identities = 139/178 (78%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 166029 TTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAA 166088 ||||||| |||||||| || || ||||| ||| | ||||| ||||| || || ||||| | Sbjct 348919 TTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTGAGA 348860 Query 166089 CCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCG 166148 | |||||||| ||||| |||||||| || |||||| ||||||||||| |||| | | Sbjct 348859 CTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAG 348800 Query 166149 ATCAACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 |||| || ||||| ||| || | |||||||| || ||||| || | || ||||| || Sbjct 348799 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 348742 >seq1 Length=28142018 Score = 141 bits (156), Expect = 1e-28 Identities = 247/355 (70%), Gaps = 6/355 (2%) Strand=Plus/Plus Query 165290 GGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCC 165349 |||||| | || || || || || | || ||||||||||| || |||||||||||| Sbjct 23237501 GGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTTCC 23237560 Query 165350 TATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGT 165409 ||| |||| ||| ||||| | ||||||||||| |||||||| | | | | | Sbjct 23237561 TATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAGCA 23237620 Query 165410 CATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTT--CGTCAGGTGGATCC 165467 |||||| | || | || ||||||||| | || || | ||||| ||| | ||| | Sbjct 23237621 CATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGT--GTTGGTGTC 23237678 Query 165468 AACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTTCA 165527 || | || || | ||| ||||||| || || ||||| ||||||| |||| ||||| | Sbjct 23237679 AATTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTA 23237738 Query 165528 TGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCG 165586 || | ||||| |||||| | || | ||| || | | || || || ||||| || | Sbjct 23237739 TGTTACGTCAATTTGAACTTGCTTGATCTGTTCAAT-TGCGGCCTTATAATGCAATCACA 23237797 Query 165587 TTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTC 165641 ||||| ||||| | | |||||||||| || || || || || || | |||| Sbjct 23237798 TTCTCCGGTCCAAGTGTTGTTTTTGTTTATGTATTCCTGATTTATCCACAAGGTC 23237852 >seq3 Length=31061273 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 166011 TTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAG 166070 ||||||| || || ||||| ||||| ||||||||||| || ||||| ||| | |||| | Sbjct 10151963 TTGGTCTGGCCCTGAACCTACGTGCCTATGACTTTGTTTCTCAAGAAATCCGCACAGCGG 10151904 Query 166071 AAGACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTTGAAT 166117 |||| || || ||||| || |||||||| ||||| ||| |||| ||| Sbjct 10151903 AAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTATCTTAAAT 10151857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556652944120440