Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq28107 150 2e-31 seq29563 105 8e-18 >seq28107 Length=123132 Score = 150 bits (166), Expect = 2e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 168874 TGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGG 168933 |||||| |||||||| || || | || || ||||||| ||| | | |||||| | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 168934 TCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTT 168993 |||||| || || |||||||||||||||||||| ||||| || |||||||| ||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 168994 CGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGG 169053 ||||| || || ||||| || |||||||||||||| || | ||| ||| ||||| || Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 169054 TATGTTCGGTGGATCTCT 169071 | | ||||| || || || Sbjct 14999 TGTATTCGGCGGCTCACT 15016 >seq29563 Length=4854 Score = 105 bits (116), Expect = 8e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 168924 ACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCA 168983 ||||| |||||||||| || || |||||||||||||||||||| || || || |||| Sbjct 4284 ACCCAATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCCGGTACTTTCA 4343 Query 168984 ACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATG 169039 |||| ||| | ||||| || | ||||| || |||||||||||||| || || ||| Sbjct 4344 ACTTTATGATTGTATTTCAGGTTGAGCATAATATTCTTATGCATCCATTTCACATG 4399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564166074888480