Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq28107 136 5e-27 seq38608 122 1e-22 seq30663 113 5e-20 seq1 105 8e-18 seq29563 102 1e-16 seq3 84.2 3e-11 >seq28107 Length=123132 Score = 136 bits (150), Expect = 5e-27 Identities = 138/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 172203 TGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGG 172262 ||| ||||||||||| || || |||| || |||| || ||| | | || ||| | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 172263 TCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTT 172322 |||||| || || ||||||||||| ||||| ||||| ||||| |||||||||||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 172323 CGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGG 172382 || || || || |||||||| ||||| |||||||| || ||||| ||| ||||| || Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 >seq38608 Length=401930 Score = 122 bits (134), Expect = 1e-22 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 173812 GCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTC 173871 || || ||||| || |||||||| || | ||||| |||||||| || || ||||||||| Sbjct 348914 GCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTGAGACTTTC 348855 Query 173872 TACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTAGATCAA 173931 ||||| || ||||| || | || |||||||| | || |||||| | || |||||| Sbjct 348854 TACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAG 348795 Query 173932 CCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 173988 || ||||| ||| | |||| || || || || ||||| | || ||||| |||||| Sbjct 348794 CCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 348738 >seq30663 Length=4160 Score = 113 bits (124), Expect = 5e-20 Identities = 179/255 (70%), Gaps = 4/255 (2%) Strand=Plus/Minus Query 158393 TGATGCAACCTGTAGGTGAGTGGGGATTTGACATTGCTGTAGGTAGTATGCAAAGGTTTG 158452 || || ||||| ||||||| ||| ||| |||| ||| ||| | || || || | Sbjct 1815 TGTTGAAACCTCCTGGTGAGTTTGGAGCTGATATTGTTGTCGGTTCTGCTCAGAGATTCG 1756 Query 158453 GTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATA 158512 || |||| ||||| || || |||||||||||||| ||||| || || || | |||||| Sbjct 1755 GTGTTCCGATGGGTTATGGTGGTCCTCATGCTGCTTTCTTGGCTACTTCACAAGAGTATA 1696 Query 158513 AGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAGGTAATAAAGC 158570 |||| | ||| ||||| ||||| | | |||||| || ||| ||||| ||| Sbjct 1695 AGAGGATGATGCCTGGAAGAATCATTGGTGTCAGT--GTTGATTCTTCTGGTAAGTCAGC 1638 Query 158571 ATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAA 158630 | || | || | || ||||| ||||||||||| | || || || || ||||| || Sbjct 1637 TTTGAGGATGGCTATGCAAACTAGGGAGCAGCATATTCGTAGGGATAAGGCTACCAGCAA 1578 Query 158631 CATCTGCACAGCACA 158645 ||| ||||| || || Sbjct 1577 CATTTGCACTGCTCA 1563 >seq1 Length=28142018 Score = 105 bits (116), Expect = 8e-18 Identities = 208/306 (68%), Gaps = 4/306 (1%) Strand=Plus/Plus Query 173045 GTGGTTGGTTCTTAGGAACTACCTTCGTTACATCATGGTATACACATGGTATTGCATCTT 173104 ||||||||||| ||| || ||||| || || ||||||||||| ||||| | ||| || Sbjct 23237499 GTGGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTT 23237558 Query 173105 CATATCTTGAAGGAGCAAACTTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGG 173164 | ||| | ||||| ||||| ||||| || |||||||| || |||| | | | Sbjct 23237559 CCTATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAG 23237618 Query 173165 GTCATAGTCTTCTGTTCCTTTGGGGACCTGAAGCACA--AGGTTCATTCGTACGTTGGTT 173222 ||| | | |||| || ||||| ||| ||||||| | | | | ||| |||||| Sbjct 23237619 CACATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGT--GTTGGTG 23237676 Query 173223 ACAACTCGGAGGACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTT 173282 ||| | || || | |||| ||||| || | || || | || ||| | |||||||| Sbjct 23237677 TCAATTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTT 23237736 Query 173283 CATGCTCCGTCAGTTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGC 173342 ||| | ||||| ||||| | || || ||| | | ||||| || ||| || | Sbjct 23237737 TATGTTACGTCAATTTGAACTTGCTTGATCTGTTCAATTGCGGCCTTATAATGCAATCAC 23237796 Query 173343 ATTCTC 173348 |||||| Sbjct 23237797 ATTCTC 23237802 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| |||||||| || ||||| || | ||||||||||| || || || ||||| || || Sbjct 16902304 TGGAGCAGATGTTTGCCATCTCAATCTTCATAAGACATTTTGCATCCCTCATGGGGGAGG 16902363 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTTGTA 159804 ||| |||||| | ||||||||||||||| ||||| | |||||||| || Sbjct 16902364 AGGCCCTGGCATGGGTCCTATTGGTGTAAAGAAACACTTGGCACCATTTTTA 16902415 >seq29563 Length=4854 Score = 102 bits (112), Expect = 1e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 172255 CCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAAC 172314 ||| | |||||||| || || ||||||||||| ||||| ||||| ||||| |||||| Sbjct 4286 CCAATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCCGGTACTTTCAAC 4345 Query 172315 TTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATG 172368 |||||| | || || || | |||||||| ||||| |||||||| || |||||| Sbjct 4346 TTTATGATTGTATTTCAGGTTGAGCATAATATTCTTATGCATCCATTTCACATG 4399 >seq3 Length=31061273 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 173785 ATCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCA 173844 || || ||||| || || ||||| | || || |||||||| |||||||| || | || Sbjct 10151967 ATAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTTGTTTCTCAAGAAATCCGCACA 10151908 Query 173845 GCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATAT 173885 || |||||||| || || |||||||||||||| || ||||| Sbjct 10151907 GCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATAT 10151867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587764150157360