Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 seq38608 86.0 7e-12 >seq1 Length=28142018 Score = 131 bits (144), Expect = 2e-25 Identities = 248/358 (69%), Gaps = 8/358 (2%) Strand=Plus/Plus Query 163715 GTGGCTGGCTTACTGGTACAACTTTCGTTACGTCGTGGTACACCCATGGACTGGCAACTT 163774 |||| ||| | || ||||| || || || || || ||||| || |||||| |||||| || Sbjct 23237499 GTGGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTT 23237558 Query 163775 CCTATCTTGAGGGTGCTAATTTTCTCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGG 163834 ||||| | || ||| ||| || | || ||||| || || || |||| | | | | | Sbjct 23237559 CCTATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAG 23237618 Query 163835 GTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAGGGCGATTT--CGTCCGCTGGA 163891 |||||| || || || || ||||||||| | || || | ||||| ||| | ||| Sbjct 23237619 CACATTCT-TTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGT--GTTGGT 23237675 Query 163892 TCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTT 163951 ||| | || || | |||| |||||| || || ||||| || || | | || |||| Sbjct 23237676 GTCAATTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTT 23237735 Query 163952 TCATGCTTCGGCAATTTGAACTTGCTCG-CCTGATTGGAATCAGACCCTACAATGCGATT 164010 | ||| | || ||||||||||||||| | ||| || | | | || || ||||| || Sbjct 23237736 TTATGTTACGTCAATTTGAACTTGCTTGATCTG-TTCAATTGCGGCCTTATAATGCAATC 23237794 Query 164011 GCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTC 164068 | ||||| ||||| | || ||| || ||| ||| || || || || || | |||| Sbjct 23237795 ACATTCTCCGGTCCAAGTGTTGTTTTTGTTTATGTATTCCTGATTTATCCACAAGGTC 23237852 >seq38608 Length=401930 Score = 86.0 bits (94), Expect = 7e-12 Identities = 133/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 164453 ATCTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCG 164512 || ||||||| || || || || |||||| || | ||||| ||||||||||| || | Sbjct 348922 ATATTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTG 348863 Query 164513 AGACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAG 164572 |||||||||| ||||| || || | || |||||||| | ||||| ||| | || | Sbjct 348862 AGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTC 348803 Query 164573 TTGACCAGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGC 164630 || |||| || || ||| || | ||||| || || || || || | || || || Sbjct 348802 AAGATCAGCCTCATGAAAAC--CTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 348745 Query 164631 GCTTTAAT 164638 ||||||| Sbjct 348744 TCTTTAAT 348737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557311822340200