Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq38608 159 4e-34 seq1 154 2e-32 seq32521 114 1e-20 seq28107 114 1e-20 seq6 107 2e-18 seq3 105 7e-18 seq38617 87.8 2e-12 >seq38608 Length=401930 Score = 159 bits (176), Expect = 4e-34 Identities = 142/178 (80%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 169318 TTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGA 169377 ||||||| |||||||| ||||| ||||| ||| | ||||| |||||||| || ||||||| Sbjct 348919 TTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTGAGA 348860 Query 169378 CGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTG 169437 | ||||||||||| || || ||||| ||||||||| ||||||| ||| | || || | Sbjct 348859 CTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAG 348800 Query 169438 ATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 |||| |||||||| ||| || | ||||||||||| || || || || || || || || Sbjct 348799 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 348742 >seq1 Length=28142018 Score = 154 bits (170), Expect = 2e-32 Identities = 250/355 (70%), Gaps = 6/355 (2%) Strand=Plus/Plus Query 168579 GGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGGTATACTCACGGGTTGGCAAGTTCC 168638 |||||| | || || || | || || || ||||||||||| || |||||||||||| Sbjct 23237501 GGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTTCC 23237560 Query 168639 TATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGT 168698 ||| |||| || ||||| | ||||||||||| |||||| | || | | | Sbjct 23237561 TATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAGCA 23237620 Query 168699 CATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAAGGGGATTT--CGTCAGATGGTGTC 168756 |||||| | || | || ||||||||| | ||||| | ||||| ||| | ||||||| Sbjct 23237621 CATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGT--GTTGGTGTC 23237678 Query 168757 AACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCA 168816 || | || || | ||| ||||||| || || ||||| ||||||| |||| ||||| | Sbjct 23237679 AATTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTA 23237738 Query 168817 TGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCG 168875 || | ||||| |||||||| || | ||| || | | || || || ||||| || | Sbjct 23237739 TGTTACGTCAATTTGAACTTGCTTGATCTGTTCAAT-TGCGGCCTTATAATGCAATCACA 23237797 Query 168876 TTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTC 168930 ||||| ||||| | | |||||||||| || || || || || || | |||| Sbjct 23237798 TTCTCCGGTCCAAGTGTTGTTTTTGTTTATGTATTCCTGATTTATCCACAAGGTC 23237852 >seq32521 Length=1850 Score = 114 bits (126), Expect = 1e-20 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 169314 AACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTT 169373 || || ||||| |||||||| ||||| ||||| ||| ||||| |||||||| || ||| Sbjct 847 AAACTACGTGCCTATGACTTCGTTTCTCAAGAAATCCACGCAGCGGAAGATCCTGAATTT 788 Query 169374 GAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGG 169424 ||||| ||||||||||| || || ||||| ||||||||| ||||||| ||| Sbjct 787 GAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGG 737 >seq28107 Length=123132 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 167471 TGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGG 167530 ||||||||| || ||||| || || || || ||| || ||| | |||| || | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 167531 TCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCT 167590 ||| || || || || | |||||||| || ||||||||||| ||||||| ||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 167591 TGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGG 167650 ||| || || || ||||| || || || ||||| || || | ||| | || || ||||| Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 167651 CGTATTCGGCGGTTCTCT 167668 ||||||||||| || || Sbjct 14999 TGTATTCGGCGGCTCACT 15016 >seq6 Length=22682783 Score = 107 bits (118), Expect = 2e-18 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 167143 TTCTGATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGT 167201 || ||||||||||||| || | | |||| | ||||| || || ||| | ||| | | | Sbjct 2047932 TTTTGATGATCCCTACCTTATTGACCGCAA-CTTCTGTATTTATTATCACTTTCATTGCT 2047990 Query 167202 GCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGT 167261 || ||| || || || ||||| | || || | ||| |||| || || | || || Sbjct 2047991 GCCCCTTTAGTAGATATTGATGG--TTCGTGAGTCTGTTTCTGGATCTCTACTTTACGGA 2048048 Query 167262 AACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTAT 167321 ||||| || || | |||||| || | ||| ||||| ||||| ||| | ||||| || Sbjct 2048049 AACAATATAATTTTTGGTGCCATTATCCCTACTTCTGCGGCTATCGGTTTGCACTTTTAC 2048108 Query 167322 CCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTT 167373 || || |||||||| ||| || | || |||| ||| ||||| || ||||||| Sbjct 2048109 CCAATATGGGAAGCTGCATCCGTTGATGAGTTGTTATACAACGGCGGTCCTT 2048160 >seq3 Length=31061273 Score = 105 bits (116), Expect = 7e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 169300 TTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAG 169359 ||||||| || || ||||| ||||| |||||||||||||| ||||| ||| | |||| | Sbjct 10151963 TTGGTCTGGCCCTGAACCTACGTGCCTATGACTTTGTTTCTCAAGAAATCCGCACAGCGG 10151904 Query 169360 AAGATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAA 169405 ||||||| || |||||||| ||||||||||| || || |||| || Sbjct 10151903 AAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTATCTTAAA 10151858 >seq38617 Length=370667 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 169325 TTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTA 169384 |||| | || |||| ||||| ||| | ||||| |||||||| | |||||||| ||||| Sbjct 75966 TTATAATTTCGTTTTTCAAGAAATCTGTGCAGCGGAAGATCCTAA-TTTGAGACTTTCTA 76024 Query 169385 CACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACC 169444 ||| | || || ||||| || |||||| ||||||| | | | || ||||||| Sbjct 76025 CACTGAAAATATTCTCTTAAATGAAGGTATTCGTGCGTAGATGAAGGCTCAAAATCAACC 76084 Query 169445 TCATGAGAACTTTGTGTTCCCTGAG 169469 |||||| || || | ||||||||| Sbjct 76085 TCATGAAAATCTTATATTCCCTGAG 76109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560334346212400