Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq1 158 1e-33 seq28107 145 9e-30 seq38608 125 9e-24 seq6 96.9 4e-15 seq29563 89.7 6e-13 seq38643 82.4 9e-11 >seq1 Length=28142018 Score = 158 bits (174), Expect = 1e-33 Identities = 246/352 (70%), Gaps = 0/352 (0%) Strand=Plus/Plus Query 183277 GGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTATACCCATGGACTTGCTTCTTCC 183336 |||||| | || || || | ||||| || |||||||| |||||| | || |||| Sbjct 23237501 GGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTTCC 23237560 Query 183337 TATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGT 183396 ||| | |||||| |||||| | || || || ||||| || |||| | | | | | Sbjct 23237561 TATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAGCA 23237620 Query 183397 CATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCAA 183456 |||||| | ||||||| ||||||||| | | || | || ||| | ||||| ||| Sbjct 23237621 CATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGTGTTGGTGTCAA 23237680 Query 183457 CTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATG 183516 | || || | |||| |||||| || || |||||||| || | | || ||||| ||| Sbjct 23237681 TTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 23237740 Query 183517 CTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTC 183576 | || || |||||||||||| | | || | || ||||| ||||| || | ||| Sbjct 23237741 TTACGTCAATTTGAACTTGCTTGATCTGTTCAATTGCGGCCTTATAATGCAATCACATTC 23237800 Query 183577 TCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTC 183628 || ||||| | || ||||||||| ||||||||| || ||||||| |||| Sbjct 23237801 TCCGGTCCAAGTGTTGTTTTTGTTTATGTATTCCTGATTTATCCACAAGGTC 23237852 >seq28107 Length=123132 Score = 145 bits (160), Expect = 9e-30 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 182177 TGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGG 182236 ||| ||||| || ||||| || || || || ||| || ||||| |||| || | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 182237 TCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTT 182296 ||| || || || |||| ||||| || |||||||| || || ||||||| |||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 182297 GGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGG 182356 || || || |||||||| || |||||||||||||| || ||||||| |||||||| || Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 182357 TGTATTCGGTGGTTCACT 182374 ||||||||| || ||||| Sbjct 14999 TGTATTCGGCGGCTCACT 15016 >seq38608 Length=401930 Score = 125 bits (138), Expect = 9e-24 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 184013 ATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTG 184072 || ||||||| ||||| || || |||||| ||| | ||||| |||||||| ||||||| Sbjct 348922 ATATTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTG 348863 Query 184073 AGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTT 184132 |||| |||||||| || || || || | || ||||| | ||||| ||| | || || Sbjct 348862 AGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTC 348803 Query 184133 CTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTC 184192 ||||| || ||||| || ||||||| || |||||||| |||| | || || |||| Sbjct 348802 AAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTC 348743 Query 184193 TTTGATG 184199 ||| ||| Sbjct 348742 TTTAATG 348736 >seq6 Length=22682783 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 181852 TGATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCA 181910 |||||||||| || | ||| | ||||| ||||| || || | ||||| | || || Sbjct 2047935 TGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCACTTTCATTGCTGCC 2047993 Query 181911 CCTCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAAC 181970 ||| || ||||| || ||| || || | || |||| || || | || || ||| Sbjct 2047994 CCTTTAGTAGATATTGATGGTT--CGTGAGTCTGTTTCTGGATCTCTACTTTACGGAAAC 2048051 Query 181971 AACATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCA 182030 || || || | |||||| || |||| | || || || ||| | ||||| |||||| Sbjct 2048052 AATATAATTTTTGGTGCCATTATCCCTACTTCTGCGGCTATCGGTTTGCACTTTTACCCA 2048111 Query 182031 ATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 182079 || ||||||||||| || ||||||||| | | || ||||| ||||||| Sbjct 2048112 ATATGGGAAGCTGCATCCGTTGATGAGTTGTTATACAACGGCGGTCCTT 2048160 >seq29563 Length=4854 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 182247 TTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAA 182306 || || |||| ||||| || |||||||| || || ||||||| |||| | || || || Sbjct 4304 TTTTCAGATGGTATGCCTCTAGGAATCTCCGGTACTTTCAACTTTATGATTGTATTTCAG 4363 Query 182307 GCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGC 182353 | |||||| || |||||||||||||| || |||||||| |||| || Sbjct 4364 GTTGAGCATAATATTCTTATGCATCCATTTCACATGTTATGTGTCGC 4410 >seq38643 Length=305821 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 183520 CGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCT 183579 || || |||||||||||||| | ||| | || ||||| ||||| || || ||||| Sbjct 248817 CGGCAATTTGAACTTGCTCGGTCTATTCAATTGCGGCCTTATAATGCAATCGCATTCTCC 248876 Query 183580 GGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTG 183624 ||| | |||||||||||||| ||||||||| || |||||||| Sbjct 248877 GGTTCAATTGCTGTTTTTGTTTATGTATTCCTGATTCATCCACTG 248921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611397408243800