Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq28107 134 2e-26 seq29563 98.7 1e-15 seq2 87.8 2e-12 >seq28107 Length=123132 Score = 134 bits (148), Expect = 2e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 170073 TGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGG 170132 ||| |||||||| ||||| || |||| || | || || ||||| | || || | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 170133 TCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTT 170192 ||||||| || ||||| || ||||||||||| ||||| ||||| || ||||| ||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 170193 CGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGG 170252 ||||| || || ||||| || ||||||||||| || || | ||| ||| || ||||| Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 170253 TATGTTCGGAGGAGCACTC 170271 | | ||||| || ||||| Sbjct 14999 TGTATTCGGCGGCTCACTC 15017 >seq29563 Length=4854 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 170131 GGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATG 170190 ||||||||| || ||||| || ||||||||||| ||||| ||||| || ||||| ||| Sbjct 4292 GGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCCGGTACTTTCAACTTTATG 4351 Query 170191 TTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCT 170250 | ||||| || | ||||| || ||||||||||| ||||| || ||| | | || ||| Sbjct 4352 ATTGTATTTCAGGTTGAGCATAATATTCTTATGCATCCATTTCACATGTTATGTGTCGCT 4411 Query 170251 GGTA 170254 ||| Sbjct 4412 AGTA 4415 >seq2 Length=32560536 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 171236 TTATTCATGTCGTGCGGGGTCATGCTCCTCATGTTGTATGAAGATTGTTGAAGGTACAGT 171295 ||| ||||| | || || || || || || ||| | || ||||| | |||| || Sbjct 25898717 TTACTCATGCAGAGCTGGTTCTTGTTCTTCTTGTGCTGGTAAAGTTGTTAATGGTAATGT 25898776 Query 171296 CAATCAAGAAGATCAGTTCTTTT-TAGATGAGGATCAGATGGAAGAAGGATTTGTTCTTA 171354 ||||| |||||| |||||||| | ||||| || ||||| |||| ||| | ||||||| Sbjct 25898777 TAATCAGGAAGATG-GTTCTTTTCTTGATGATGAACAGATTGAAGGAGGTTGGGTTCTTA 25898835 Query 171355 CTTGCGTTGCCCTCCCAACATCAGATCTTACT 171386 |||| ||||| |||| ||||| ||| ||||| Sbjct 25898836 CTTGTGTTGCTTTCCCTACATCTGATGTTACT 25898867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582563490034400