Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq28107 131 2e-25 seq6 91.5 2e-13 seq29563 87.8 2e-12 >seq28107 Length=123132 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 84381 CCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCC 84440 || |||||||||||||| || || ||||||| ||| ||||||||||| || ||||| || Sbjct 15010 CCGCCGAATACACCAGCTACACCTAACATGTAAAACGGATGCATAAGAATATTATGCTCA 14951 Query 84441 GCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAG 84500 ||||| || |||| ||| ||||||| || || ||||| || || ||||| ||||| || Sbjct 14950 GCCTGAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAA 14891 Query 84501 AAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCA 84560 || || || || | || || | | ||| || ||| || |||||||| ||||| Sbjct 14890 AAGCTTCCCTGACCTATTGGGTAGATCAAGAAAACTGCAATAGCAGCTGCAACCGGAGCT 14831 Query 84561 GAGTAAGCAACA 84572 || || |||||| Sbjct 14830 GAATATGCAACA 14819 >seq6 Length=22682783 Score = 91.5 bits (100), Expect = 2e-13 Identities = 167/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 84669 TAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAA 84728 ||||| || || || |||| | | || || | ||| |||||||| || || || || Sbjct 2048161 TAAGGACCGCCGTTGTATAACAACTCATCAACGGATGCAGCTTCCCATATTGGGTAAAAG 2048102 Query 84729 TGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTAC 84788 || | ||| ||||| ||| | || | | ||||||| |||| || ||||||||||| Sbjct 2048101 TGCAAACCGATAGCCGCAGAAGTAGGGATAATGGCACCAAAAATTATATTGTTTCCGTAA 2048042 Query 84789 ATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACG 84848 | ||||| |||| || | |||||| ||| |||||||| ||| || ||| ||| | Sbjct 2048041 AGTAGAGATCCAGAAACAGACTCACG--AACCATCAATATCTACTAAAGGGGCAGCAATG 2047984 Query 84849 AATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAA 84907 || | || || || ||||| ||| || | | || || || ||||| | | ||| ||| Sbjct 2047983 AAAGTGATAATAAATACAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAATTCAAAA 2047925 Query 84908 C 84908 | Sbjct 2047924 C 2047924 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/210 (70%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 84704 TGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATG----GAACTA 84759 ||| |||||||| || || || || || | ||| ||||| ||| | | ||| | Sbjct 2115229 TGCAGCTTCCCATATCGGGTAAAAGTGCAAACCGATAGCCGCAGAAGTAGCTAGGAATAA 2115288 Query 84760 CGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATAC 84819 ||||||| |||| || ||||||||||| | ||||| |||| || | |||||| || Sbjct 2115289 TGGCACCAAAAATTATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGACTCACG--AAC 2115346 Query 84820 CGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCA 84878 | |||||||| ||| || ||| ||| ||| || || || || ||||| ||| || | Sbjct 2115347 CATCAATATCTACTAAAGGGGCAGCAATGAAAGCGATAATAAATACAGA-AGTTGCGGTC 2115405 Query 84879 AGTAGAGTTGGAATCATAAGAGTTCCAAAC 84908 | || || || ||||| | | ||| |||| Sbjct 2115406 AATAAGGTAGGGATCATCAAAATTCAAAAC 2115435 >seq29563 Length=4854 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 84392 ACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGAC 84451 || ||| || | ||||||||||| ||||||||||| || ||||| || |||| || || Sbjct 4414 ACTAGCGACACATAACATGTGAAATGGATGCATAAGAATATTATGCTCAACCTGAAATAC 4355 Query 84452 AAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAA 84502 || ||| ||||||| || || ||||| || || ||||| ||||| || || Sbjct 4354 AATCATAAAGTTGAAAGTACCGGAGATTCCTAGAGGCATACCATCTGAAAA 4304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570994739933080