Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq28107 125 2e-24 seq6 91.5 4e-14 >seq28107 Length=123132 Score = 125 bits (138), Expect = 2e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 26185 TGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGG 26244 |||||||||| |||| || | | || ||| | ||||| ||||| | || || | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 26245 ACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTT 26304 || || || ||| ||||| |||||||| || |||||||||||||| ||||||||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 26305 CGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGG 26364 ||||| || || || |||||||| || ||||| || || | ||| ||||| ||||| Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 26365 GGTTTTCGGTGG 26376 || ||||| || Sbjct 14999 TGTATTCGGCGG 15010 >seq6 Length=22682783 Score = 91.5 bits (100), Expect = 4e-14 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 25907 TTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTA 25966 ||||| || || || |||||||| ||||| | |||||| | ||||| || || || Sbjct 2047982 TTCATTGCTGCCCCTTTAGTAGATATTGATGG--TTCGTGAGTCTGTTTCTGGATCTCTA 2048039 Query 25967 ATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTA 26026 | ||||||||||||||||| | || || | |||| | ||| || ||||| | Sbjct 2048040 CTTTACGGAAACAATATAATTTTTGGTGCCATTATCCCTACTTCTGCGGCTATCGGTTTG 2048099 Query 26027 CATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCA 26086 || |||||||| || |||||||||| | | || |||| | ||||||| ||||| || Sbjct 2048100 CACTTTTACCCAATATGGGAAGCTGCATCCGTTGATGAGTTGTTATACAACGGCGGTCCT 2048159 Query 26087 TA 26088 || Sbjct 2048160 TA 2048161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146658358474824