Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq28107 172 2e-38 seq29563 113 1e-20 seq28688 87.8 5e-13 >seq28107 Length=123132 Score = 172 bits (190), Expect = 2e-38 Identities = 163/202 (81%), Gaps = 7/202 (3%) Strand=Plus/Minus Query 5603 CCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCT 5662 || |||||||| ||||| ||||| | ||||| |||||||||||||| ||||| || || Sbjct 15010 CCGCCGAATACACCAGCTACACCTAACATGTAAAACGGATGCATAAGAATATTATGCTCA 14951 Query 5663 GCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTG 5722 ||||| ||||| | ||||||||| |||||||||||||| || |||||||||||||| || Sbjct 14950 GCCTGAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC--TG 14893 Query 5723 AAA--CTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGT 5779 ||| |||||||| || | ||||| | || || |||| | ||| | || |||||||| Sbjct 14892 AAAAGCTTCCCTGACCTATTGGGTAGATCAAGAAAACTGCAATAG-CAGCTGCAACCGGA 14834 Query 5780 GCTGAATATGCTAC-GCAAATC 5800 ||||||||||| || |||| || Sbjct 14833 GCTGAATATGCAACAGCAACTC 14812 >seq29563 Length=4854 Score = 113 bits (124), Expect = 1e-20 Identities = 104/130 (80%), Gaps = 4/130 (3%) Strand=Plus/Minus Query 5617 AGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAA 5676 ||| |||| | |||||| || ||||||||||| ||||| || || |||| ||||| | Sbjct 4411 AGCGACACATAACATGTGAAATGGATGCATAAGAATATTATGCTCAACCTGAAATACAAT 4352 Query 5677 CATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAA--CTTCCCTGT 5734 ||||||||| |||||||| ||||| || ||||||||||||| |||||| |||||||| Sbjct 4351 CATAAAGTTGAAAGTACCGGAGATTCCTAGAGGCATACCAT--CTGAAAAGCTTCCCTGA 4294 Query 5735 CCGAAAGGGT 5744 || | |||| Sbjct 4293 CCAATTGGGT 4284 >seq28688 Length=72243 Score = 87.8 bits (96), Expect = 5e-13 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 6032 TCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTA 6091 ||||| || | || || || ||| | || ||||| | || || | |||||| ||| | Sbjct 2104 TCACGAATACAATCAATATCTACTAGAGGGGCAGCAATAAAAGCGATAATAAATACAGAA 2045 Query 6092 GTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTG 6151 |||||||| || | || || ||||| || ||||||||||| || | ||| || ||||| Sbjct 2044 GTTGCGGTCAATAATGTAGGGATCATCAAAACACCAAACCATCCAATATAAAGACGGTTT 1985 Query 6152 TTGGTGCTAGTAACCCAGTCACAGAA 6177 | ||||| || | ||||| |||||| Sbjct 1984 TCAGTGCTGGTTATCCAGTTACAGAA 1959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152578811705586