Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq28107 161 3e-35 seq6 114 4e-21 seq29563 104 7e-18 seq28688 86.0 2e-12 >seq28107 Length=123132 Score = 161 bits (178), Expect = 3e-35 Identities = 151/192 (79%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 25861 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCT 25920 || |||||||| || || ||||| | ||| | |||||||||||||| ||||| || || Sbjct 15010 CCGCCGAATACACCAGCTACACCTAACATGTAAAACGGATGCATAAGAATATTATGCTCA 14951 Query 25921 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 25980 |||||||| |||| |||||| |||||||| || || || || |||||||||||||| || Sbjct 14950 GCCTGAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAA 14891 Query 25981 AAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCT 26040 || || || || || | ||||||| ||||| || |||| || |||||||| || ||| Sbjct 14890 AAGCTTCCCTGACCTATTGGGTAGATCAAGAAAACTGCAATAGCAGCTGCAACCGGAGCT 14831 Query 26041 GAATAAGCTACA 26052 ||||| || ||| Sbjct 14830 GAATATGCAACA 14819 >seq6 Length=22682783 Score = 114 bits (126), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 26149 TATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAG 26208 || || || ||||| || ||| |||| || | || |||||||||||| |||||||| ||| Sbjct 2048161 TAAGGACCGCCGTTGTATAACAACTCATCAACGGATGCAGCTTCCCATATTGGGTAAAAG 2048102 Query 26209 TGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAG 26268 || | |||||| || ||| | |||| || || || | || || |||||||| || Sbjct 2048101 TGCAAACCGATAGCCGCAGAAGTAGGGATAATGGCACCAAAAATTATATTGTTTCCGTAA 2048042 Query 26269 AGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACA 26328 |||| | ||| || |||| ||||||| |||||| ||||| || ||| ||||||| Sbjct 2048041 AGTAGAGATCCAGAAACAGACTCACGA--ACCATCAATATCTACTAAAGGGGCAGCAATG 2047984 Query 26329 AATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCAT 26375 || | || | |||| | | ||| || || | | ||||||||| Sbjct 2047983 AAAGTGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCAT 2047937 Score = 80.6 bits (88), Expect = 8e-11 Identities = 144/209 (69%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 26171 ACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATG 26230 |||| || | | |||||||||||| || ||||| ||||| | |||||| || ||| | Sbjct 2115216 ACTCATCAACAGATGCAGCTTCCCATATCGGGTAAAAGTGCAAACCGATAGCCGCAGAAG 2115275 Query 26231 ----ACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACA 26286 || | || || || | || || |||||||| || |||| | ||| || ||| Sbjct 2115276 TAGCTAGGAATAATGGCACCAAAAATTATATTGTTTCCGTAAAGTAGAGATCCAGAAACA 2115335 Query 26287 GGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCT 26346 | ||||||| |||||| ||||| || ||| ||||||| || || || | |||| | Sbjct 2115336 GACTCACGA--ACCATCAATATCTACTAAAGGGGCAGCAATGAAAGCGATAATAAATACA 2115393 Query 26347 GTCACTGCTGTTAAAAGTGCAGGGATCAT 26375 | ||| || || | | ||||||||| Sbjct 2115394 GAAGTTGCGGTCAATAAGGTAGGGATCAT 2115422 >seq29563 Length=4854 Score = 104 bits (114), Expect = 7e-18 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 25876 GCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAAC 25935 || |||| | ||| || || ||||||||||| ||||| || || ||||||| |||| | Sbjct 4410 GCGACACATAACATGTGAAATGGATGCATAAGAATATTATGCTCAACCTGAAATACAATC 4351 Query 25936 ATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCA 25995 ||||| |||||||| || || || || |||||||||||||| || || || || || ||| Sbjct 4350 ATAAAGTTGAAAGTACCGGAGATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCA 4291 Query 25996 AAAGGGT 26002 | |||| Sbjct 4290 ATTGGGT 4284 >seq28688 Length=72243 Score = 86.0 bits (94), Expect = 2e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 26289 CTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGT 26348 ||||||||||| ||| ||||| || |||| ||||||| ||| || || | |||| | | Sbjct 2105 CTCACGAATACAATCAATATCTACTAGAGGGGCAGCAATAAAAGCGATAATAAATACAGA 2046 Query 26349 CACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTT 26408 ||| || || | || ||||||||| | || |||||||| || | ||| || ||||| Sbjct 2045 AGTTGCGGTCAATAATGTAGGGATCATCAAAACACCAAACCATCCAATATAAAGACGGTT 1986 Query 26409 GTTTGTACTTGTAACCCAGTCACATAA 26435 | || || || | ||||| ||| || Sbjct 1985 TTCAGTGCTGGTTATCCAGTTACAGAA 1959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151923115912876