Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 seq28226 141 1e-28 >seq2 Length=32560536 Score = 143 bits (158), Expect = 3e-29 Identities = 254/367 (69%), Gaps = 5/367 (1%) Strand=Plus/Minus Query 37172 TAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGT 37231 |||||| || ||||||||||| | |||||| || | || | || || ||||| || Sbjct 19587402 TAAACAAGCGAAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGT 19587343 Query 37232 TAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAA 37291 ||| || ||||||||||| | |||||||| ||| || ||||| |||| ||||||||| Sbjct 19587342 TAAACCAGGCATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAAAAACTTCCAGAAAA 19587283 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATC 37351 || ||||||||||| ||||| || || | | | | | || |||| | | Sbjct 19587282 AAATATACCTTCAACACAAGCAAAAGCAACGATTCTTTCAGCAAA---TGAATCAGATGA 19587226 Query 37352 AGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGC 37411 | |||||||| | | |||||| || || | ||| ||| || |||||||| Sbjct 19587225 ATCGATCCATTTCATAGCCCAATCAGCTTTCTTCGCGATACACGGAATCGTCTCAATTGC 19587166 Query 37412 TTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATA 37471 | || | | || || || | ||| | |||||||| ||||| | | |||||| Sbjct 19587165 ATGAAACAAACGATTCTTCTCAATAGAATCATTGATATAAGTTTCAATCAAGAGACTATA 19587106 Query 37472 CATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATA-AAAACACCTAGCTTCAG 37530 ||| ||||| ||||||||||| || || ||||| ||||| || ||| ||| | ||||| | Sbjct 19587105 CATCTCAGAATGAATATTTTCGATCGCGATCTGGAAACCGTAGAAAGCACGT-GCTTCGG 19587047 Query 37531 ATAATTG 37537 | | ||| Sbjct 19587046 AGACTTG 19587040 >seq28226 Length=90112 Score = 141 bits (156), Expect = 1e-28 Identities = 256/374 (68%), Gaps = 3/374 (1%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| |||||||| ||||| | ||||| || | || | ||||| ||||| ||| Sbjct 34797 AAACAGGCAAAATCGCAATGAAGTCCTTCGTCGCGTGAAATAAGCTCATTTGAAAAAGTT 34738 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAG 37292 || || ||||||||||| | |||||||| |||||| ||||| ||| |||||| || Sbjct 34737 AAACCAGGCATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTTCCAGAGAAA 34678 Query 37293 AAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA 37352 || ||||||||||| ||||| || || | | | | | || |||| | | | Sbjct 34677 AATATACCTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAA---TGAATCAGATGAA 34621 Query 37353 GAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCT 37412 |||||||| | | |||||| || || | ||| ||| ||| || ||||| || Sbjct 34620 TCGATCCATTTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATAGTCTCAATCGCG 34561 Query 37413 TTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATAC 37472 | || | | || || || || ||| |||||||| ||||| | | ||||||| Sbjct 34560 TGAAACAAACGATTCTTCTCAACAGAATCATGGATATAAGTTTCAATCAAGAGACTATAC 34501 Query 37473 ATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGAT 37532 || ||||| |||||||| || || || ||||| || || || ||| | || || ||| Sbjct 34500 ATCTCAGAATGAATATTCTCGATCGCAATCTGGAATCCGTAGAAAGCACGCGCCTCTGAT 34441 Query 37533 AATTGAACATCGTT 37546 | |||||| || || Sbjct 34440 ACTTGAACTTCTTT 34427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592027667958040