Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq28674 185 7e-42 seq28626 161 8e-35 seq4 132 4e-26 seq1 131 1e-25 seq28803 129 5e-25 seq9364 123 2e-23 seq3 122 7e-23 seq5139 107 2e-18 seq30363 93.3 3e-14 >seq28674 Length=75340 Score = 185 bits (204), Expect = 7e-42 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | ||| | | ||| |||||||| ||||| ||||| || ||||| ||||| | Sbjct 21044 TTCCACCACGTAACCTAAGAACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATCAG 20985 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | |||||| |||| ||||||||||| |||||||| ||||| || |||||||| || | Sbjct 20984 CAAGAGTTCTACCATCTTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGAG 20925 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||||||||||||||| ||| || || | || | |||||||| | ||| | Sbjct 20924 GAATTCCTTCTTTATCTTGAATCTTTGCCTTCACGTTGTCGATTGTGTCAGAAGATTCGA 20865 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||| || |||| |||||||| |||| ||||| || || || |||||| Sbjct 20864 CTTCGAGTGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCATG 20815 Score = 132 bits (146), Expect = 4e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| ||||||||||| || ||||| ||||| || | ||| || |||| || | || Sbjct 21246 TGAAGCGTAGATTCTTTCTGAATATTATAATCAGCAAGAGTCCTTCCATCTTCAAGCTGT 21187 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| ||||| ||||| ||||| || ||||| || || ||||| ||||| || Sbjct 21186 TTACCAGCAAAGATCAATCGCTGCTGATCAGGTGGAATCCCCTCCTTATCCTGAATCTTC 21127 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||| ||||| | ||||| || | ||| | ||| || || || Sbjct 21126 GCCTTCACATTATCAATAGTATCAGAACTCTCCACCTCCAAAGTAATCGTCTTTCCCGTC 21067 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| |||||||| Sbjct 21066 AACGTCTTCACAAAAATCTGCAT 21044 Score = 100 bits (110), Expect = 2e-16 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | ||| || || ||||||||||| || || ||| | | | Sbjct 20803 ACGGAGAACGAGATGGAGCGTTGATTCTTTTTGGATGTTATAANNNNNNNNCG----GCC 20748 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | ||| || || || || || | ||||||||| || || ||||| ||||| || Sbjct 20747 GTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCTT 20688 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||| ||||| ||| || | || | ||||| || | ||| || || || || | Sbjct 20687 ATCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTTAT 20628 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||||||||||| ||||| || || ||||||||| Sbjct 20627 GGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATG 20591 >seq28626 Length=87040 Score = 161 bits (178), Expect = 8e-35 Identities = 169/221 (76%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 101253 AACGTAA-AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||| ||| ||| ||||| || ||||| ||||| || ||||| ||||| || | ||| || Sbjct 42374 AACCTAAGAACCAAATGTAGCGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTCCTC 42433 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 |||| ||||||||||| |||||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 42434 CCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGAATTCCTTCC 42493 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 || ||||| ||||| ||| || | || | || || || | ||| || || || || Sbjct 42494 TTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTATCGGAGGATTCTACCTCTAGGGTT 42553 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 | ||||||||||||| ||||| || || ||||||||||| Sbjct 42554 ATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATGGT 42594 Score = 145 bits (160), Expect = 6e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| ||||||||||| || ||||| ||||| || | ||||| |||| || | || Sbjct 42161 TGAAGTGTAGATTCTTTCTGAATATTATAATCAGCAAGAGTTCATCCATCCTCAAGCTGT 42220 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| ||||| ||||||||||| || ||||| || || ||||| ||||| || Sbjct 42221 TTACCGGCAAAGATCAATCGCTGTTGATCAGGTGGAATCCCCTCCTTATCCTGAATCTTG 42280 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||| ||||| | ||||| |||||||| | ||| || || || Sbjct 42281 GCCTTCACATTATCAATAGTATCAGAACTCTCCACCTCAAGAGTAATCGTCTTCCCCGTC 42340 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| |||||||| Sbjct 42341 AACGTCTTCACAAAAATCTGCAT 42363 >seq4 Length=28907061 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || | ||||| || || ||||| || || || ||||| || | |||||| | Sbjct 27565670 ACGCAAGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTATAATCAGCCAGGGTTCTGCC 27565611 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||||| || ||||| ||||| | ||| ||||| || ||||| |||||||| Sbjct 27565610 ATCTTCGAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGGGGAATACCTTCTTT 27565551 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||| || || || ||| | |||| |||||||| | ||||| ||||| |||| Sbjct 27565550 ATCTTGTATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCCACCTCAAGGGTGAT 27565491 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || | || || ||||| |||||||| Sbjct 27565490 GGTCTTTCCAGTGAGGGTCTTAACAAAGATCTGCAT 27565455 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| |||||||| || ||||| || ||||||||||| | || | | || ||| Sbjct 27565207 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGCCCGTCCTCC 27565148 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| |||| |||||| || || || || || ||||| ||||||||| Sbjct 27565147 AGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTGA 27565088 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | |||| || || || | || ||||| ||||||| || ||| Sbjct 27565087 ATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCCAGAGTGATGGTCTTG 27565028 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || || || || ||||| Sbjct 27565027 CCAGTGAGGGTCTTAACGAAGATTTGCAT 27564999 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | ||| | || | ||||||||| ||||| || || || ||||||||||| Sbjct 27565909 CCTCCCCTCAGACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 27565850 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| | |||| || | ||||| || ||||| ||||| | || ||||| || ||| Sbjct 27565849 AAGGTTCGGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCCGGGGGA 27565790 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || || || || || ||| | || | ||||| || | || || Sbjct 27565789 ATGCCCTCCTTGTCCTGTATCTTAGCCTTCACATTGTCAATTGTGTCTGAGCTCTCAACC 27565730 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||| | || || || || | |||||| ||||| |||||||| Sbjct 27565729 TCCAAAGTTATTGTCTTACCAGTAAGAGTTTTCACAAAAATCTGCAT 27565683 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| ||||| || || || || ||||| || || | || || |||| ||||||||| Sbjct 27566113 TGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAATTGC 27566054 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| ||||| | ||| ||||| || || || || || || ||||| |||||| Sbjct 27566053 TTGCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGTATTTTT 27565994 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || || || |||| || || | || | || || || || Sbjct 27565993 GCCTTGACATTATCGATCGTATCTGAACTTTCTACCTCCAATGTAATGGTCTTTCCAGTC 27565934 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 ||||| || ||||| |||||||| Sbjct 27565933 AAAGTCTTCACAAAGATCTGCAT 27565911 >seq1 Length=28142018 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || ||||| | || | ||||| || || || || || ||||||||||| || Sbjct 1586411 CCACCCCTCAAACGCAGCACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCA 1586470 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || || |||| |||||||| || |||||||| ||||| | ||| ||||| || ||| Sbjct 1586471 AGGGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATCAACCTCTGCTGATCTGGGGGA 1586530 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||| || || || || ||| | || | ||||| || | ||||| Sbjct 1586531 ATACCTTCCTTATCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCTGAGCTCTCCACC 1586590 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | || || ||||| ||||| || |||||||||||||| Sbjct 1586591 TCCAAGGTTATGGTCTTACCGGTCAAAGTCTTGACAAATATCTGCAT 1586637 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| | |||||| || || || || || ||||||||||| || Sbjct 1587161 CCTCCACGCAGACGGAGAACAAGATGAAGCGTGGACTCCTTCTGAATATTGTAATCAGCA 1587220 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| || | || ||||| ||||| || || || || | ||| || || || || ||| Sbjct 1587221 AGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCCGGAGGA 1587280 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || || || || ||| || | || | |||||||| | ||||| Sbjct 1587281 ATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCCACC 1587340 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || || ||||| | ||||| || || || ||||| Sbjct 1587341 TCAAGGGTGATGGTCTTTCCGGTGAGTGTTTTCACGAAGATTTGCAT 1587387 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || | || ||||| || || || || |||||||||||||| | ||| | | | Sbjct 1586944 ACGCAACACAAGGTGGAGGGTTGACTCCTTCTGGATATTGTAATCGGCCAAAGTACGGCC 1587003 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | ||||| || ||||| ||||| | ||| || || || || || ||||| || Sbjct 1587004 GTCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTT 1587063 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || || || || | || | |||||||| |||| || ||||| |||| Sbjct 1587064 GTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTTTCAACCTCAAGGGTGAT 1587123 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || | ||| || || || |||||||| Sbjct 1587124 GGTCTTTCCTGTGAGAGTCTTGACGAAGATCTGCAT 1587159 >seq28803 Length=52646 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||||||||| || || |||||||| ||||||||||| | || | | || ||| Sbjct 33787 ACCAAATGAAGGGTTGACTCCTTTTGTATGTTGTAATCGGCAAGGGTACGCCCGTCCTCC 33846 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| |||| |||||| || || || || || ||||| ||||||||| Sbjct 33847 AGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTGA 33906 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | |||| || || || | || ||||||||||||| || ||| Sbjct 33907 ATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCAAGAGTGATGGTCTTG 33966 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || || || || ||||| Sbjct 33967 CCAGTGAGGGTCTTAACGAAGATTTGCAT 33995 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || || | |||||| |||||||| || || || ||||| || || | || || || Sbjct 32545 CGCAACACAAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCA 32604 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || ||||||||||| || ||||| ||||| | ||| ||||| || || || ||||| || Sbjct 32605 TCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTG 32664 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 || || |||||| || ||| | || | || ||||| |||| || || | ||| | Sbjct 32665 TCCTGTATTTTTGCCTTGACATTATCGATTGTATCAGAACTTTCTACCTCCAAAGTAATG 32724 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || || || || || ||||| ||||||||| Sbjct 32725 GTCTTCCCTGTCAAGGTCTTCACAAAGATCTGCATG 32760 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || || || | || | ||||||||| ||||| || || || ||||||||||| Sbjct 33313 CCTCCCCTCAACCGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 33372 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || | ||||| || ||||| ||||| | || || || || || Sbjct 33373 AAAGTTCGCCCATCTTCGAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGGGGG 33432 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || |||||||| || || ||| | || | |||||| || | || || Sbjct 33433 ATACCCTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATAGTGTCTGAGCTCTCAACC 33492 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||| | || ||||| || | ||| || ||||| |||||||| Sbjct 33493 TCCAAAGTTATTGTCTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 33539 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| ||||| || || || || ||||| || || | || || |||| ||||||||| Sbjct 38770 TGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAATTGC 38829 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| ||||| | ||| ||||| || || || ||||| || || || |||||| Sbjct 38830 TTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGTATTTTT 38889 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || ||||| |||| || || | || | || || || || Sbjct 38890 GCCTTGACATTATCGATTGTATCAGAACTTTCTACCTCCAATGTAATGGTCTTCCCTGTC 38949 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 || || || ||||| ||||||||| Sbjct 38950 AACGTCTTCACAAAGATCTGCATG 38973 Score = 100 bits (110), Expect = 2e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 101288 ATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGC 101347 || ||||| || || | || || |||| ||||||||||| || ||||| ||||| | | Sbjct 8844 ATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTC 8785 Query 101348 TGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTG 101407 || ||||| || || || ||||| || || || |||||| || ||| | || | || Sbjct 8784 TGCTGATCTGGTGGGATTCCTTCCTTGTCCTGTATTTTTGCCTTAACATTATCGATTGTA 8725 Query 101408 TCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGC 101467 || || |||| || || | ||| | || || || || ||||| || ||||| |||||| Sbjct 8724 TCTGAACTTTCTACCTCCAAAGTAATGGTCTTCCCTGTCAAAGTCTTCACAAAGATCTGC 8665 Query 101468 ATG 101470 ||| Sbjct 8664 ATG 8662 >seq9364 Length=1264 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| ||||| ||||| || || ||||| || ||||||||||| | || | | Sbjct 523 ACGGAGAACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGCAAGGGTCCGCCC 582 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || |||| || || || ||||| ||||||||||| || || || || || ||||| || Sbjct 583 GTCCTCCAGCTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCCGGTGGGATCCCTTCCTT 642 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||||||| || ||| | |||| || || || | || ||||||||||| | Sbjct 643 ATCTTGAATTTTGGCCTTAACATTGTCTATGGTATCGGAACTCTCAACTTCAAGAGTAAT 702 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || | || || ||||| || ||||| Sbjct 703 GGTCTTACCAGTGAGGGTCTTGACAAAGATTTGCAT 738 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || ||||| | || | ||||||||| ||||| || || || ||||||||||| Sbjct 56 CCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 115 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || | ||||| || ||||| ||||| | || || || || || Sbjct 116 AAAGTTCGCCCATCTTCGAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGGGGG 175 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || ||||| || ||| ||| | || | |||||| || | || || Sbjct 176 ATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCAATAGTGTCTGAGCTCTCAACC 235 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||| | || ||||| || | || || ||||| |||||||| Sbjct 236 TCCAAAGTAATAGTCTTGCCAGTAAGGGTCTTCACAAAAATCTGCAT 282 >seq3 Length=31061273 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || ||||| | || | ||||||||| ||||| || || || ||||||||||| Sbjct 12366858 CCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 12366799 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| | |||| |||| ||||| || ||||| ||||| | || || || || ||| Sbjct 12366798 AAGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAAATCAACCTTTGCTGGTCTGGAGGA 12366739 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || ||||| || || || ||| | || | ||||| || |||| || Sbjct 12366738 ATACCCTCCTTGTCTTGTATCTTGGCCTTCACATTGTCAATTGTGTCTGAGCTTTCTACC 12366679 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||| | || ||||| || | || || ||||| |||||||| Sbjct 12366678 TCCAAAGTAATGGTCTTGCCTGTAAGCGTCTTAACAAAAATCTGCAT 12366632 Score = 118 bits (130), Expect = 8e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || || | ||||||||| ||||| || || || ||||||||||| | |||| | || Sbjct 12366618 CGCAAGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCA 12366559 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||| ||||| || ||||| |||| | || || || || ||||| || || || Sbjct 12366558 TCTTCCAGCTGCTTTCCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATACCCTCCTTG 12366499 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 |||||||| || || ||| | || | ||| || || | || || || | ||| | | Sbjct 12366498 TCTTGAATCTTGGCCTTAACATTGTCAATAGTATCTGAGCTCTCAACCTCCAAAGTAATC 12366439 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| || | || || ||||| |||||||| Sbjct 12366438 GTTTTGCCTGTAAGCGTCTTAACAAAAATCTGCAT 12366404 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || ||||| | |||||| ||||| || || || || ||||| || || | ||| || || Sbjct 12367530 CGCAAAACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCA 12367471 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || ||||||||||| || ||||| ||||| | ||| ||||| || || || || || ||| Sbjct 12367470 TCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTA 12367411 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 || || |||||| || || | || | ||||| || |||| || || | || | Sbjct 12367410 TCCTGTATTTTTGCCTTCACGTTATCAATTGTGTCTGAACTTTCTACCTCCAAGGTAATG 12367351 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||| | || || ||||| || ||||| Sbjct 12367350 GTCTTTCCGGTCAGCGTCTTCACAAAGATTTGCAT 12367316 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| ||||| || || ||||| || |||||||| || | || | |||| ||| Sbjct 12366156 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGGGTACGCCCATCCTCC 12366097 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| |||| |||||| || || | || || ||||| ||||||||| Sbjct 12366096 AGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGATGGGATCCCTTCCTTATCTTGA 12366037 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | |||| || || || | || ||||| ||||| || || ||| Sbjct 12366036 ATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTAACGGTCTTG 12365977 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | | || ||||| || ||||| Sbjct 12365976 CCTGTAAGCGCCTTAACAAAGATTTGCAT 12365948 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | ||| | || | ||||| || || ||||| || || || ||||| || Sbjct 12367314 CCTCCCCTCAGACGAAGGACAAGGTGAAGCGTGGACTCTTTCTGAATGTTATAATCAGCC 12367255 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| || | ||||| || ||||||||||| | || || || || ||| Sbjct 12367254 AAAGTCCGGCCATCTTCAAGCTGCTTTCCAGCAAATATCAACCTTTGCTGGTCTGGGGGA 12367195 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| || || || || || ||| | || | |||||| || | || || Sbjct 12367194 ATACCTTCTTTGTCCTGTATCTTGGTCTTCACATTGTCAATAGTGTCTGAGCTCTCTACC 12367135 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | || || ||||| | ||| || || || |||||||| Sbjct 12367134 TCCAAGGTAATAGTCTTTCCGGTAAGAGTCTTCACGAAAATCTGCAT 12367088 >seq5139 Length=1344 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| ||||| || || ||||| || ||||||||||| | || | |||| ||| Sbjct 1305 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGCCCATCCTCC 1246 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| |||| |||||| || || || || | ||||| ||||||||| Sbjct 1245 AGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGTTCCCTTCCTTATCTTGA 1186 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | |||| || || || | || ||||| |||| || || ||| Sbjct 1185 ATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGCGATGGTCTTG 1126 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || || || || || || Sbjct 1125 CCAGTGAGGGTCTTAACGAAGATTTGTAT 1097 >seq30363 Length=1936 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||| ||||||||||| || ||||| |||||||| | ||| | |||| || | ||| Sbjct 1449 TGAACTGTAGATTCTTTCTGAATATTATAATCGGCAAGAGTCCGTCCATCTTCAAGTTGT 1390 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||||| ||||| ||||| || ||||||| || ||||| || || ||||| ||||| || Sbjct 1389 TTACCGGCAAAGATCAATCGTTGTTGATTAGGTGGAATCCCCTCCTTATCCTGAATCTT 1331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396089797611207