Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq5 125 2e-23 seq29358 123 6e-23 seq28756 100 7e-16 >seq5 Length=15272566 Score = 125 bits (138), Expect = 2e-23 Identities = 262/379 (69%), Gaps = 16/379 (4%) Strand=Plus/Minus Query 150402 TTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTA 150461 ||||||||||||||||||||||||| | ||||| || || || || | || | || Sbjct 4183835 TTGGTGAACCAGGTGTTGGTAAAACTGCTGTTGTTGAAGGGTTGGCTCAGAGGATTGTTA 4183776 Query 150462 ATGGTGATGTTCC-AG-ATTCTATGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGC 150519 ||||||||||| || | ||| || |||||| | || ||||| |||||||||| Sbjct 4183775 GAGGTGATGTTCCTAGTAATCT-TGCT-GATGTTAGGTTGATTGCTTTGGATATGGGTGC 4183718 Query 150520 ATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTA 150577 ||| |||||| |||||||| | || ||||| |||||| | || || | ||| | Sbjct 4183717 ATTGGTGGCTGGTGCTAAGTATAGGGGAGAATTTGAAGAAAGGTTGAAGGCTGTTT--TG 4183660 Query 150578 CAAGAACTAAAAGAACGCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATT 150634 ||||| | ||||| || | | |||||||| ||||| |||||||| ||| | || Sbjct 4183659 AAAGAAGTTGAAGAAGCTGAAGGGAAAGTTATTCTTTTCATTGATGAAATTCATCTTGTT 4183600 Query 150635 ATGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCT 150694 | ||||||||| ||| | || || ||||| ||| | || |||||| Sbjct 4183599 CTTGGTGCTGGTAGAACT---GAAGGATCAATGGATGCTGCTAATCTTTTCAAACCTATG 4183543 Query 150695 CTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAACCTACGATGAATATCGTAAACA 150753 || |||| || || || | ||| || ||||| ||||| ||| |||||| | || | Sbjct 4183542 CTTGCTCGTGGACAACTTAGATGT-ATTGGTGCTACAACACTCGAGGAATATAGAAAGTA 4183484 Query 150754 CATTGAAAAAGATGCAGCA 150772 ||||||| ||||| ||| Sbjct 4183483 TGTTGAAAAGGATGCTGCA 4183465 >seq29358 Length=5525 Score = 123 bits (136), Expect = 6e-23 Identities = 257/376 (68%), Gaps = 14/376 (4%) Strand=Plus/Minus Query 150404 GGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAAT 150463 ||||| |||||||||||||||||| | ||||| || || || || | || | ||| Sbjct 2205 GGTGAGCCAGGTGTTGGTAAAACAGCTGTTGTTGAAGGGTTGGCTCAGAGAATAGTTAAA 2146 Query 150464 GGTGATGTTCC-AGA-TTCTATGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCAT 150521 || ||| |||| ||| ||||| ||||| | || ||||| ||||||| |||| Sbjct 2145 GGAGATATTCCTAGAGATCTAT--CTGATGTACGGTTAATTGCTTTGGATATGGGAGCAT 2088 Query 150522 TTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACA 150579 | ||||||| |||||||| || ||||| ||||| | || ||||| ||| || | Sbjct 2087 TAGTTGCTGGTGCTAAGTATTTGGGAGAATTTGAAGAGAGGTTGAAGACAGTTT--TAAA 2030 Query 150580 AGAACTAAAAGAACGCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTAT 150636 |||| | |||| || | | ||| |||| ||||| |||||||| ||| | || | Sbjct 2029 AGAAGTGGAAGATGCTGAAGGGAAGGTTGTTCTTTTCATTGATGAAATTCATCTTGTTCT 1970 Query 150637 GGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCT 150696 ||||||||| ||| || | | ||||| || | || |||||| || Sbjct 1969 CGGTGCTGGTCGAACTCAAGGAG---CAATGGATGCTGCTAACCTTTTCAAACCTATGCT 1913 Query 150697 ATCTCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACAT 150756 ||||||| || || | ||| ||||||||||| ||||||||| | ||| | | Sbjct 1912 TGCTCGCGGCCAACTTAGATGCATTGGTGCAACAACACTTGATGAATATAGGAAATATGT 1853 Query 150757 TGAAAAAGATGCAGCA 150772 |||||| ||||||||| Sbjct 1852 TGAAAAGGATGCAGCA 1837 >seq28756 Length=60169 Score = 100 bits (110), Expect = 7e-16 Identities = 254/376 (68%), Gaps = 14/376 (4%) Strand=Plus/Plus Query 150404 GGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAAT 150463 ||||| || || ||||||||||| || ||||| ||||| || || | || | || Sbjct 16421 GGTGAGCCGGGAGTTGGTAAAACGGCCATTGTTGAAGGATTGGCTCAGAGAATAGTTAGA 16480 Query 150464 GGTGATGTTCC-AG-ATTCTATGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCAT 150521 || |||||||| || | ||| || |||||| | || |||| ||||||| |||| Sbjct 16481 GGAGATGTTCCTAGCAATCT-TGCT-GATGTTAGCTTAATTGCTTTAGATATGGGAGCAT 16538 Query 150522 TTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACA 150579 | ||| |||||||||||| | || ||||||||||| | || || | ||| | | Sbjct 16539 TAGTTGCAGGTACTAAGTATAGGGGACAATTCGAAGAAAGGTTGAAGGCGGTTT--TGAA 16596 Query 150580 AGAACTAAAAGAACGCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTAT 150636 |||| | |||| |||| | |||||| | |||||||||||||| ||| | || | Sbjct 16597 AGAAGTGGAAGATGCTGATGGGAAGGTTATTGTTTTCATCGATGAAATTCATCTTGTTCT 16656 Query 150637 GGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCT 150696 ||||||||| | | | || || ||||| ||| | || |||||| || Sbjct 16657 CGGTGCTGGT-CAA--TGTTCAGGATCAATGGATGCTGCTAATCTTTTCAAACCTATGCT 16713 Query 150697 ATCTCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACAT 150756 |||| || || | ||||||||| || || ||||||||| | ||| | | Sbjct 16714 TGCTCGTGGAACCCTTAGATGCATCGGTGCTACGACACTTGATGAATATAGGAAATATGT 16773 Query 150757 TGAAAAAGATGCAGCA 150772 |||||| ||||||||| Sbjct 16774 TGAAAAGGATGCAGCA 16789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147016213543398