Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq28107 107 2e-18 seq6 100 3e-16 >seq28107 Length=123132 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 162882 TGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGG 162941 ||||||||| || || || || | || || | || || |||||| |||| || | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 162942 TCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTT 163001 ||| || || || || | |||||||| || || ||||||||||| |||| ||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 163002 CGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGG 163061 || || || || ||||| || || || ||||| || || | ||| | || || || || Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 163062 TGTATTCGGTGGTTCACTC 163080 ||||||||| || |||||| Sbjct 14999 TGTATTCGGCGGCTCACTC 15017 >seq6 Length=22682783 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 162556 TTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCA 162615 |||||||||||| ||| | | ||| | || || || || | |||||||| || Sbjct 2047934 TTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCACTTTCATTGCTGCC 2047993 Query 162616 CCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAAC 162675 ||| ||| ||||| |||||| || | || ||||| | || || || || || || ||| Sbjct 2047994 CCTTTAGTAGATATTGATGGT-TC-GTGAGTCTGTTTCTGGATCTCTACTTTACGGAAAC 2048051 Query 162676 AACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCT 162735 || || || | |||||| | | |||| ||| ||||| ||| | ||||| || || Sbjct 2048052 AATATAATTTTTGGTGCCATTATCCCTACTTCTGCGGCTATCGGTTTGCACTTTTACCCA 2048111 Query 162736 ATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTT 162784 || |||||||| ||| | ||||||||| ||| || || || || |||| Sbjct 2048112 ATATGGGAAGCTGCATCCGTTGATGAGTTGTTATACAACGGCGGTCCTT 2048160 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 162556 TTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCA 162615 |||||||||||| ||| | | ||| | || || || || || |||||||| || Sbjct 2115425 TTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCC 2115366 Query 162616 CCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAAC 162675 ||| ||| ||||| |||||| || | || ||||| | || || || || || || ||| Sbjct 2115365 CCTTTAGTAGATATTGATGGT-TC-GTGAGTCTGTTTCTGGATCTCTACTTTACGGAAAC 2115308 Query 162676 AACATCATCTCTGGTGCTGTCGTTCCTAG----TTCAAATGCTATTGGTCTTCACTTCTA 162731 || || || | |||||| | ||||||| ||| ||||| ||| | ||||| || Sbjct 2115307 AATATAATTTTTGGTGCCATTATTCCTAGCTACTTCTGCGGCTATCGGTTTGCACTTTTA 2115248 Query 162732 TCCTATCTGGGAAGCAGCAACTCTTGATGAGT 162763 || || |||||||| ||| || ||||||||| Sbjct 2115247 CCCGATATGGGAAGCTGCATCTGTTGATGAGT 2115216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552814818568440