Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq38608 141 1e-28 seq7 125 8e-24 seq28817 91.5 2e-13 seq32521 87.8 2e-12 seq3 86.0 7e-12 >seq38608 Length=401930 Score = 141 bits (156), Expect = 1e-28 Identities = 141/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 165442 TTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGA 165501 ||||||| || || ||||| ||| || ||| | ||||| |||||||| |||||||||| Sbjct 348919 TTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTGAGA 348860 Query 165502 CCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTG 165561 | |||||||||||||| || || || || ||||| | ||||||||| |||| || | Sbjct 348859 CTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAG 348800 Query 165562 ATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTT 165621 |||| || ||||||||| |||| ||||| || || || | || | || ||||| |||| Sbjct 348799 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTT 348740 Query 165622 AAT 165624 ||| Sbjct 348739 AAT 348737 >seq7 Length=30551617 Score = 125 bits (138), Expect = 8e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 164063 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 164122 ||||| |||| |||||||| | ||||||||||| || || || |||||||||||| Sbjct 3659803 TACATCTTAGATGCAGCAGAGAATGCAGGAGTTGAACTTCCATATTCGTGTCGTGCTGGT 3659744 Query 164123 GCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCA 164182 || ||||| | ||||| || || |||| ||||| |||| |||||| |||| ||| Sbjct 3659743 GCGTGCTCTACCTGTGCTGGGAAGGTTGTTTCTGGTTCTGTAGATCAGTCTGATGGCTCA 3659684 Query 164183 TTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACA 164242 | || ||||| | ||| || | ||| || ||||| || ||||| || |||||||| Sbjct 3659683 TATCTCGACGACGGTCAAATAAATGAAGGTTTTGTGCTAACCTGTGTTGCCTATCCAACT 3659624 Query 164243 TCTGATTGTGTT 164254 || ||||||||| Sbjct 3659623 TCAGATTGTGTT 3659612 >seq28817 Length=50997 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 164053 AGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTG 164112 ||| ||| | |||||||| |||| |||||||||| ||| ||||| || |||||| || Sbjct 35497 AGATGATGAGTACATTCTTGACGTAGCAGAAGAACAAGGCGTTGACCTTCCTTACTCATG 35556 Query 164113 TCGTGCTGGTGCTTGCTCCTCATGTGCAGGTAAAATTGTA 164152 | |||||||||||||| |||||||| || ||| ||||| Sbjct 35557 CAGGGCTGGTGCTTGCTCTTCATGTGCTGGAAAAGTTGTA 35596 >seq32521 Length=1850 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 165438 AACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTT 165497 || || ||||| || || ||||| ||| || ||| ||||| |||||||| |||||| Sbjct 847 AAACTACGTGCCTATGACTTCGTTTCTCAAGAAATCCACGCAGCGGAAGATCCTGAATTT 788 Query 165498 GAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTTGG 165548 ||||| |||||||||||||| || || || || ||||| | ||||| ||| Sbjct 787 GAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGG 737 >seq3 Length=31061273 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 165424 TTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAG 165483 ||||||| || || ||||| ||||| || || || || ||| || ||| | |||| | Sbjct 10151963 TTGGTCTGGCCCTGAACCTACGTGCCTATGACTTTGTTTCTCAAGAAATCCGCACAGCGG 10151904 Query 165484 AAGATCCAGAATTTGAGACCTTCTACACCAAAAACAT 165520 ||||||| ||||||||||| |||||||||||||| || Sbjct 10151903 AAGATCCTGAATTTGAGACTTTCTACACCAAAAATAT 10151867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562934676273880