Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq28226 96.9 6e-15 >seq28226 Length=90112 Score = 96.9 bits (106), Expect = 6e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 ||||||||||| || | |||||| || || |||||||| |||||||| || | ||||| Sbjct 34503 TACATCTCAGAATGAATATTCTCGATCGCAATCTGGAATCCGTAGAAAGCACGCGCCTCT 34444 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGCA-GATTCTCATTGACTATCCCATCTGA 48543 | || || |||||| | |||||| ||| ||| ||||||| ||| || || || || Sbjct 34443 GATACTTGAACTTCTTTCATGAATCT-TCCTGCAAGATTCTCCAAGACAATGCCGTCGGA 34385 Query 48544 AGCAGCAAAGAA 48555 |||||||||||| Sbjct 34384 AGCAGCAAAGAA 34373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931078083907840