Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq28107 161 1e-34 seq1 143 3e-29 seq38608 120 3e-22 seq29563 104 2e-17 seq32521 95.1 1e-14 seq3 87.8 2e-12 >seq28107 Length=123132 Score = 161 bits (178), Expect = 1e-34 Identities = 155/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 8631 TGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGG 8690 ||||||||| || ||||| ||||| |||||| ||| || ||| | |||| || | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 8691 TCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCT 8750 ||| || || || |||||||||||||| || ||||| ||||| ||||||| |||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 8751 TGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGG 8810 ||| || ||||||||||| || || || ||||| || || ||||| | ||||| ||||| Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 8811 TGTCTTCGGCGGATCTCTC 8829 ||| |||||||| || ||| Sbjct 14999 TGTATTCGGCGGCTCACTC 15017 >seq1 Length=28142018 Score = 143 bits (158), Expect = 3e-29 Identities = 243/350 (69%), Gaps = 4/350 (1%) Strand=Plus/Plus Query 9909 GTGGCTGGCTTACTGGCACTACGTTTGTCACGAGTTGGTACACTCACGGACTTGCAAGTA 9968 |||| ||| | || || || || ||||| || ||||| ||||| ||| | |||||| Sbjct 23237499 GTGGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTT 23237558 Query 9969 GTTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGG 10028 || | || ||| ||| ||| | || ||||| ||||| || |||| | || | | | Sbjct 23237559 CCTATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAG 23237618 Query 10029 GTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGAGATTT--CGTCCGCTGGAT 10086 |||||| | | |||| ||||||||| | | || | |||||| ||| | ||| Sbjct 23237619 CACATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGT--GTTGGTG 23237676 Query 10087 CCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTT 10146 || | || || | ||| ||||||| || || ||||| || |||| ||||| || || Sbjct 23237677 TCAATTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTT 23237736 Query 10147 TATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATCGC 10206 ||||||||| || ||||| || || ||| || | | || ||||| ||||| ||| | Sbjct 23237737 TATGTTACGTCAATTTGAACTTGCTTGATCTGTTCAATTGCGGCCTTATAATGCAATCAC 23237796 Query 10207 GTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCAC 10256 || || || || | || ||||||||| ||| ||||| || ||||||| Sbjct 23237797 ATTCTCCGGTCCAAGTGTTGTTTTTGTTTATGTATTCCTGATTTATCCAC 23237846 >seq38608 Length=401930 Score = 120 bits (132), Expect = 3e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 10647 ATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTG 10706 || ||||||| || || || || |||||||| ||| | || | |||||||||||||||| Sbjct 348922 ATATTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTG 348863 Query 10707 AGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAG 10766 |||| ||||| || || ||||| || | ||||||||| ||||||| |||||||| | Sbjct 348862 AGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTC 348803 Query 10767 TTGACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 || || || || |||| | || | ||||| || || ||||| || Sbjct 348802 AAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 348757 >seq29563 Length=4854 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 8687 TTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATA 8746 ||||||| || || || |||||||||||||| || ||||||||||| ||||||| || Sbjct 4290 TTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCCGGTACTTTCAACTTTA 4349 Query 8747 TGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTG 8806 || |||| || |||| |||||| || || || ||||| || || |||||| | |||| | Sbjct 4350 TGATTGTATTTCAGGTTGAGCATAATATTCTTATGCATCCATTTCACATGTTATGTGTCG 4409 Query 8807 CTGGT 8811 || || Sbjct 4410 CTAGT 4414 >seq32521 Length=1850 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 10646 AATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTT 10705 || || ||||| || || || || |||||||| ||| || | ||||||||||||||| Sbjct 847 AAACTACGTGCCTATGACTTCGTTTCTCAAGAAATCCACGCAGCGGAAGATCCTGAATTT 788 Query 10706 GAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGA 10757 ||||| ||||| || || ||||| || | ||||||||| ||||||| |||| Sbjct 787 GAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGA 736 >seq3 Length=31061273 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 10626 GAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGG 10685 |||| ||||||| || || || || ||||| || || ||||| |||||||| ||| | Sbjct 10151969 GAATAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTTGTTTCTCAAGAAATCCGCA 10151910 Query 10686 CGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATAT 10728 | | |||||||||||||||||||| ||||| || || ||||| Sbjct 10151909 CAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATAT 10151867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516227886744000