Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq1 141 1e-28 seq28107 129 6e-25 seq2 91.5 2e-13 >seq1 Length=28142018 Score = 141 bits (156), Expect = 1e-28 Identities = 240/345 (70%), Gaps = 2/345 (1%) Strand=Plus/Plus Query 162213 GGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCC 162272 |||||| | || || || || || || || ||||||||||| ||| | || |||||| Sbjct 23237501 GGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTTCC 23237560 Query 162273 TATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGT 162332 ||| | || ||| ||||| | ||||||||||| |||||||| | | | | | Sbjct 23237561 TATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAGCA 23237620 Query 162333 CATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAA 162392 |||||| | || | || ||||||||| | | || | || || | | ||||| ||| Sbjct 23237621 CATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGTGTTGGTGTCAA 23237680 Query 162393 CTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATG 162452 | || || | ||||||||||| || || ||||| || || | | | |||||||| ||| Sbjct 23237681 TTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 23237740 Query 162453 CTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTT 162511 | || || |||||||| || || || || | | || ||||| ||||| || | || Sbjct 23237741 TTACGTCAATTTGAACTTGCTTGATCTGTTCAAT-TGCGGCCTTATAATGCAATCACATT 23237799 Query 162512 CTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCC 162556 ||| ||||| | || ||| || ||| ||| || || || ||||| Sbjct 23237800 CTCCGGTCCAAGTGTTGTTTTTGTTTATGTATTCCTGATTTATCC 23237844 >seq28107 Length=123132 Score = 129 bits (142), Expect = 6e-25 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 161250 TTGGATTTGC-GTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCT 161308 || || |||| || ||||| || ||||| || || || || | |||||| ||| || ||| Sbjct 14809 TTTGAGTTGCTGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCT 14868 Query 161309 ATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCA 161368 | || | ||||| || || || |||| |||||||| || ||||||||||| |||| Sbjct 14869 ACCCAATAGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCA 14928 Query 161369 ACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCG 161428 ||| ||| |||| || || || ||||| || ||||| ||||| || || | ||| | | Sbjct 14929 ACTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAG 14988 Query 161429 GCGTAGCAGGTGTGTTTGGCGGTTCTCT 161456 | ||||| ||||| || ||||| || || Sbjct 14989 GTGTAGCTGGTGTATTCGGCGGCTCACT 15016 >seq2 Length=32560536 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 ||||| |||||| |||||||||| || | ||||| |||||| ||| | || || Sbjct 25898676 TACATTCTTGACCATGCTGAGGAAGTTGGAATTGAACTTCCTTACTCATGCAGAGCTGGT 25898735 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 ||||||| || ||||| || ||| | || ||| | || | || || || Sbjct 25898736 TCTTGTTCTTCTTGTGCTGGTAAAGTTGTTAATGGTAATGTTAATCAGGAAGATGGTTCT 25898795 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520 || || || ||||| || || || |||| |||| ||||||||| ||| |||||| Sbjct 25898796 TTTCTTGATGATGAACAGATTGAAGGAGGTTGGGTTCTTACTTGTGTTGCTTTCCCTACA 25898855 Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACT 158558 |||| | ||||||||| |||||||||||||||| Sbjct 25898856 TCTGATGTTACTATTGAGACTCACAAGGAAGAGGAACT 25898893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547479824051160