Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq6 127 6e-25 seq28107 125 2e-24 seq28688 89.7 2e-13 seq29563 87.8 5e-13 >seq6 Length=22682783 Score = 127 bits (140), Expect = 6e-25 Identities = 165/227 (73%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 18531 TATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAG 18590 || || || ||||| |||||| |||| || | || |||||||||||| |||||||| ||| Sbjct 2048161 TAAGGACCGCCGTTGTATAACAACTCATCAACGGATGCAGCTTCCCATATTGGGTAAAAG 2048102 Query 18591 TGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAG 18650 || | |||||| || ||| | |||| || || || | || || |||||||| || Sbjct 2048101 TGCAAACCGATAGCCGCAGAAGTAGGGATAATGGCACCAAAAATTATATTGTTTCCGTAA 2048042 Query 18651 AGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACA 18710 |||| | ||| || |||| ||||||| |||||| || || || ||| ||||||| Sbjct 2048041 AGTAGAGATCCAGAAACAGACTCACGA--ACCATCAATATCTACTAAAGGGGCAGCAATG 2047984 Query 18711 AATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCAT 18757 || | || | |||| | | || |||||| || | | ||||||||| Sbjct 2047983 AAAGTGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCAT 2047937 Score = 89.7 bits (98), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 18553 ACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATG 18612 |||| || | | |||||||||||| || ||||| ||||| | |||||| || ||| | Sbjct 2115216 ACTCATCAACAGATGCAGCTTCCCATATCGGGTAAAAGTGCAAACCGATAGCCGCAGAAG 2115275 Query 18613 ----ACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668 || | || || || | || || |||||||| || |||| | ||| || ||| Sbjct 2115276 TAGCTAGGAATAATGGCACCAAAAATTATATTGTTTCCGTAAAGTAGAGATCCAGAAACA 2115335 Query 18669 GGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCT 18728 | ||||||| |||||| || || || ||| ||||||| || || || | |||| | Sbjct 2115336 GACTCACGA--ACCATCAATATCTACTAAAGGGGCAGCAATGAAAGCGATAATAAATACA 2115393 Query 18729 GTAGCTGCGGTTAAAAGTGCAGGGATCAT 18757 | || |||||| || | | ||||||||| Sbjct 2115394 GAAGTTGCGGTCAATAAGGTAGGGATCAT 2115422 Score = 82.4 bits (90), Expect = 2e-11 Identities = 150/218 (69%), Gaps = 9/218 (4%) Strand=Plus/Plus Query 18540 CCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCG 18599 ||||| ||||||||||| || | | |||||||||| | |||| ||||| |||| Sbjct 2026898 CCGTTGTATAACCACTCATCAACG----CAGCTTCCCATACCAGGTAAAAGTGTGAACCG 2026953 Query 18600 ATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCT 18659 || || ||| | || | || || || || || || |||||| || |||| | | Sbjct 2026954 ATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATTATATTGTTTTGGTAAAGTAGAGAT 2027013 Query 18660 CCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATC 18719 | || |||| ||||||| |||||| || | | | ||| ||||||| || ||||| Sbjct 2027014 TCAGAAACAGACTCACGA--ACCATCAAT---ATCTGAAGGGGCAGCAATGAAAGCAATA 2027068 Query 18720 AAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCAT 18757 | |||| | || |||||| || | | ||||||||| Sbjct 2027069 ATAAATACAAAAGTTGCGGTCAATAAGGTAGGGATCAT 2027106 >seq28107 Length=123132 Score = 125 bits (138), Expect = 2e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 18243 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCG 18302 || |||||||| || || ||||| | ||| | |||||||||||||| ||||| || || Sbjct 15010 CCGCCGAATACACCAGCTACACCTAACATGTAAAACGGATGCATAAGAATATTATGCTCA 14951 Query 18303 GCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAG 18362 || || ||||| | ||| || ||||||||||| || || |||||||||||||| || Sbjct 14950 GCCTGAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAA 14891 Query 18363 AAACTCCCTTGTCCAAAAGGATA-AACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGC 18421 || || || || || | || || | | ||||| |||| | |||||||| || || || Sbjct 14890 AAGCTTCCCTGACCTATTGGGTAGATCAAGAAA-ACTGCAATAGCAGCTGCAACCGGAGC 14832 Query 18422 GGAATAAGCAACA 18434 ||||| |||||| Sbjct 14831 TGAATATGCAACA 14819 >seq28688 Length=72243 Score = 89.7 bits (98), Expect = 2e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 18671 CTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGT 18730 ||||||||||| ||| || || || |||| ||||||| ||| || || | |||| | | Sbjct 2105 CTCACGAATACAATCAATATCTACTAGAGGGGCAGCAATAAAAGCGATAATAAATACAGA 2046 Query 18731 AGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 || |||||| || | || ||||||||| | || |||||||| || | || || ||||| Sbjct 2045 AGTTGCGGTCAATAATGTAGGGATCATCAAAACACCAAACCATCCAATATAAAGACGGTT 1986 Query 18791 GTTTGTACTCGTAACCCAGTCACATAA 18817 | || || || | ||||| ||| || Sbjct 1985 TTCAGTGCTGGTTATCCAGTTACAGAA 1959 >seq29563 Length=4854 Score = 87.8 bits (96), Expect = 5e-13 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 18258 GCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAAC 18317 || |||| | ||| || || ||||||||||| ||||| || || | || ||||| | | Sbjct 4410 GCGACACATAACATGTGAAATGGATGCATAAGAATATTATGCTCAACCTGAAATACAATC 4351 Query 18318 ATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCA 18377 || || |||||||||||| || || |||||||||||||| || || || || || ||| Sbjct 4350 ATAAAGTTGAAAGTACCGGAGATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCA 4291 Query 18378 A 18378 | Sbjct 4290 A 4290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151248229023794