Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq7 134 2e-26 seq4 113 6e-20 seq2 111 2e-19 seq3 89.7 7e-13 seq1 82.4 1e-10 >seq7 Length=30551617 Score = 134 bits (148), Expect = 2e-26 Identities = 144/189 (76%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 102805 GACTACCACA-TCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTT 102863 || || |||| || |||||||| || || || ||||| || ||||||||| | | || || Sbjct 3659608 GAATAACACAATCTGAAGTTGGATAGGCAACACAGGTTAGCACAAAACCTTCATTTATTT 3659667 Query 102864 GATCGTCATCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAG 102923 || |||| || ||| | || ||| |||||||||| ||| || ||| ||| |||| Sbjct 3659668 GACCGTCGTCGAGATATGAGCCATCAGACTGATCTACAGAACCAGAAACAACCTTCCCAG 3659727 Query 102924 CACAAGTAGAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAG 102983 |||| ||||| ||||||||||||||||| ||||| || || ||||| ||||| | || | Sbjct 3659728 CACAGGTAGAGCACGCACCAGCACGACACGAATATGGAAGTTCAACTCCTGCATTCTCTG 3659787 Query 102984 CAGCGTCTA 102992 | || |||| Sbjct 3659788 CTGCATCTA 3659796 >seq4 Length=28907061 Score = 113 bits (124), Expect = 6e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 102808 TACCACATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATC 102867 ||| || || | |||||| || | || ||||| || ||||| ||| | | ||||||| Sbjct 20821359 TACAACGTCTGCAGTTGGATAGGAAACACAGGTAAGCACAAAGCCTTCCTTAAGTTGATT 20821418 Query 102868 GTCATCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACA 102927 |||||||| || || ||| ||||| || | ||| || ||||||| |||||||| Sbjct 20821419 GTCATCCAAGAAAGAGCCATCAGACTGATCCACTGAACCAGAAACAATCTTTCCAGCACA 20821478 Query 102928 AGTAGAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGC 102987 |||||| || || ||||| || || |||||||| || ||||| || || | || || || Sbjct 20821479 AGTAGAGCATGCTCCAGCGCGGCACGAATAAGGGAGTTCAACTCCAGCATTCTCTGCTGC 20821538 Query 102988 GTCTAGAATATATTGATCATCC 103009 |||| || || ||||||| Sbjct 20821539 ATCTAAGATGTAAACATCATCC 20821560 >seq2 Length=32560536 Score = 111 bits (122), Expect = 2e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 102812 ACATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCA 102871 ||||| || || ||| | || || || || ||||| ||||| |||| | || || ||| Sbjct 25898863 ACATCAGATGTAGGGAAAGCAACACAAGTAAGAACCCAACCTCCTTCAATCTGTTCATCA 25898804 Query 102872 TCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATT--CAATCTTACCAGCACAAG 102929 || ||||| || |||||| |||| ||| |||| ||| ||| ||||||||||||| Sbjct 25898803 TCAAGAAAAGAACCATCTTCCTGATTAACATTACC--ATTAACAACTTTACCAGCACAAG 25898746 Query 102930 TAGAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGT 102989 |||||| | |||||| | || || ||||| || |||| || |||| |||||| || Sbjct 25898745 AAGAACAAGAACCAGCTCTGCATGAGTAAGGAAGTTCAATTCCAACTTCCTCAGCATGGT 25898686 Query 102990 CTAGAATATATTGATCATC 103008 | ||||| || |||||| Sbjct 25898685 CAAGAATGTAAACATCATC 25898667 >seq3 Length=31061273 Score = 89.7 bits (98), Expect = 7e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 101809 ATGTTCTTTGTGTAGAACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGAT 101868 || || || |||||||| ||||| || || |||||||| |||| | ||| ||||| || Sbjct 10151867 ATATTTTTGGTGTAGAAAGTCTCAAATTCAGGATCTTCCGCTGTGCGGATTTCTTGAGAA 10151926 Query 101869 ACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAA 101905 ||||||||||| ||||| ||||| || || ||||||| Sbjct 10151927 ACAAAGTCATAGGCACGTAGGTTCAGGGCCAGACCAA 10151963 >seq1 Length=28142018 Score = 82.4 bits (90), Expect = 1e-10 Identities = 126/178 (71%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 102824 GGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAG--TTGATCGTCATCCAGAAAGG 102881 ||||| | || || || |||| | |||| ||||| | ||| | ||||| ||||||| Sbjct 46115 GGGTACGAGACACATGTGAGAAGATAACC--CTTCTCGACTTGCTGCTCATCGAGAAAGG 46172 Query 102882 ATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCAC 102941 ||||||| ||||| || | ||| || | | | || ||||||||||| || |||| Sbjct 46173 ATTGATCAGACTGATCAACGGAACCTGAAACTACTTGGCCGGCACAAGTAGAGCATGCAC 46232 Query 102942 CAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATA 102999 |||| | || || ||||| || || || || || || ||||| | || ||||| || Sbjct 46233 CAGCTCTGCATGAGTAAGGTAGCTCCACTCCAGCATCTTCAGCTGAATCCAGAATGTA 46290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633204358255080