Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq28107 125 2e-24 seq29563 96.9 1e-15 >seq28107 Length=123132 Score = 125 bits (138), Expect = 2e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 21879 CCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCA 21938 || || ||||| || || ||||| | ||||| ||| ||||||||||||||||| |||||| Sbjct 15010 CCGCCGAATACACCAGCTACACCTAACATGTAAAACGGATGCATAAGAATATTATGCTCA 14951 Query 21939 GCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAA 21998 ||||| || || | ||| ||||||| || || || || || | |||||| |||| ||| Sbjct 14950 GCCTGAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAA 14891 Query 21999 AAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCA 22058 || ||||| || | || || | | ||| || ||| | ||||| || || ||||| Sbjct 14890 AAGCTTCCCTGACCTATTGGGTAGATCAAGAAAACTGCAATAGCAGCTGCAACCGGAGCT 14831 Query 22059 GAGTACGCAACA 22070 || || |||||| Sbjct 14830 GAATATGCAACA 14819 >seq29563 Length=4854 Score = 96.9 bits (106), Expect = 1e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 21894 GCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGC 21953 || |||| | ||||||||| ||||||||||||||||| |||||| |||| || || | | Sbjct 4410 GCGACACATAACATGTGAAATGGATGCATAAGAATATTATGCTCAACCTGAAATACAATC 4351 Query 21954 ATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCA 22013 || ||||||| || ||||| || || | |||||| |||| ||||| ||||| ||| Sbjct 4350 ATAAAGTTGAAAGTACCGGAGATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCA 4291 Query 22014 A 22014 | Sbjct 4290 A 4290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146140198872780