Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq28107 145 9e-30 seq30663 120 4e-22 seq1 114 1e-20 seq29563 111 2e-19 seq38608 104 3e-17 >seq28107 Length=123132 Score = 145 bits (160), Expect = 9e-30 Identities = 149/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 124454 GATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGC 124513 || || ||||| | || ||||| ||| ||||| || |||||||| ||||| |||||| Sbjct 15013 GAGCCGCCGAATACACCAGCTACACCTAACATGTAAAACGGATGCATAAGAATATTATGC 14954 Query 124514 TCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCA 124573 || || || || || | |||||||||||||||||| ||||| || || ||||||||||| Sbjct 14953 TCAGCCTGAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCT 14894 Query 124574 GAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGT 124633 || || |||||||| | |||||| | ||||| || || | ||||| | || || Sbjct 14893 GAAAAGCTTCCCTGACCTATTGGGTAGATCAAGAAAACTGCAATAGCAGCTGCAACCGGA 14834 Query 124634 GCTGAATAAGCAACA 124648 |||||||| |||||| Sbjct 14833 GCTGAATATGCAACA 14819 >seq30663 Length=4160 Score = 120 bits (132), Expect = 4e-22 Identities = 179/252 (71%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || ||||| ||||| ||||| || || || || | |||||||||||| |||||||| Sbjct 1563 TGAGCAGTGCAAATGTTGCTGGTAGCCTTATCCCTACGAATATGCTGCTCCCTAGTTTGC 1622 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTGC 139434 | || | || | || | || || || ||||||| ||| | ||||| | Sbjct 1623 ATAGCCATCCTCAAAGCTGACTTACCAGAAGAATCAACACTGAC--ACCAATGATTCTTC 1680 Query 139435 CAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGT 139494 |||| ||| | |||||||||| | || || || ||||| |||||||||||||| || | Sbjct 1681 CAGGCATCATCCTCTTATACTCTTGTGAAGTAGCCAAGAAAGCAGCATGAGGACCACCAT 1740 Query 139495 ATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATCAAATCCCCACTCAC 139554 | ||||| |||| ||| || || || | ||| ||| |||||||| ||| |||||| Sbjct 1741 AACCCATCGGAACACCGAATCTCTGAGCAGAACCGACAACAATATCAGCTCCAAACTCAC 1800 Query 139555 CTACAGGTTGCA 139566 | ||||| || Sbjct 1801 CAGGAGGTTTCA 1812 >seq1 Length=28142018 Score = 114 bits (126), Expect = 1e-20 Identities = 210/306 (69%), Gaps = 4/306 (1%) Strand=Plus/Minus Query 123506 GAGAATGCGAGTGCGTTGTAAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTG 123565 ||||||| || ||| || ||||| | | ||| || || | |||||||| | Sbjct 23237802 GAGAATGTGATTGCATTATAAGGCCGCAATTGAACAGATCAAGCAAGTTCAAATTGACGT 23237743 Query 123566 AGCATGAAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCG 123625 | ||| |||||||| | ||| || | || || | || ||||| |||| | ||| || Sbjct 23237742 AACATAAAACCTATTAATCCGAAAGCACCGTGAAGAGCAACAAAAGTCCACATACCACCT 23237683 Query 123626 AGTTGTAACCAACGAACGAATGATCCT--TGTGCTTCAGGTCCCCAAAGGAACATGAGAC 123683 | ||| |||||| ||| | ||| | ||||||| ||| ||||| || |||| | | Sbjct 23237682 AATTGACACCAAC--ACGTAAAATCTTCATGTGCTTTAGGACCCCACAGTAACAACAAAG 23237625 Query 123684 TATGACCCATTGCGTCACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAA 123743 ||| | | | | |||| || |||||||| || ||||||||||| || || | Sbjct 23237624 AATGTGCTAAACTATTAACAGGAGTAGAGACTGCCGCAGTTAAGAAGTTACAACCTTCCA 23237565 Query 123744 GATATGAAGATGCAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACC 123803 ||| ||| ||| | ||||| ||||||||||| || || ||||| || ||| ||||| Sbjct 23237564 AATAGGAACTTGCCAATCCATGAGTATACCATGAAGTTACAAAGGTGGTACCTGTGAACC 23237505 Query 123804 AACCAC 123809 |||||| Sbjct 23237504 AACCAC 23237499 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 138158 TACAAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCC 138217 || |||||||| | ||||| ||||||||||||||| | |||||| ||||| || || Sbjct 16902415 TAAAAATGGTGCCAAGTGTTTCTTTACACCAATAGGACCCATGCCAGGGCCTCCTCCCCC 16902356 Query 138218 ATGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 ||| || || || ||||||||||| | ||| ||||| || |||||||| ||| Sbjct 16902355 ATGAGGGATGCAAAATGTCTTATGAAGATTGAGATGGCAAACATCTGCTCCA 16902304 >seq29563 Length=4854 Score = 111 bits (122), Expect = 2e-19 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 124483 CATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAA 124542 |||||| || |||||||| ||||| |||||||| | || || || | |||||||||||| Sbjct 4399 CATGTGAAATGGATGCATAAGAATATTATGCTCAACCTGAAATACAATCATAAAGTTGAA 4340 Query 124543 AGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGT 124598 |||||| ||||| || || ||||||||||| || || |||||||||| ||||| Sbjct 4339 AGTACCGGAGATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATTGGGT 4284 >seq38608 Length=401930 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || || ||||| || || Sbjct 348738 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 348797 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || ||||| || | ||||| || || || ||||| Sbjct 348798 ATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGAA 348857 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGC 123042 |||||| || || || ||||| ||||| | || |||||||| || ||||| || || Sbjct 348858 AGTCTCAAATTCAGGATCTTCCGCTGCGCGGATTTCTTGAGAAACGAAGTCATAGGC 348914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578715769168520