Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq28107 159 5e-34 seq4 152 7e-32 seq1 147 3e-30 seq7 114 2e-20 seq2 104 3e-17 >seq28107 Length=123132 Score = 159 bits (176), Expect = 5e-34 Identities = 154/198 (78%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27136 AGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTG 27195 || || || |||||||| ||||| ||||| | ||||| ||||| |||||||| ||||| Sbjct 15016 AGTGAGCCGCCGAATACACCAGCTACACCTAACATGTAAAACGGATGCATAAGAATATTA 14957 Query 27196 TGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCA 27255 || || ||||| ||||||| ||| |||| |||||||||||||| || ||||||||| || Sbjct 14956 TGCTCAGCCTGAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCA 14897 Query 27256 TCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACT 27315 || || || || ||||| | || |||| | ||| |||||| | ||||| || || Sbjct 14896 TCTGAAAAGCTTCCCTGACCTATTGGGTAGATCAAGAAAACTGCAATAGCAGCTGCAACC 14837 Query 27316 GGAGCAGAATATGCTACA 27333 ||||| |||||||| ||| Sbjct 14836 GGAGCTGAATATGCAACA 14819 >seq4 Length=28907061 Score = 152 bits (168), Expect = 7e-32 Identities = 174/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 32608 TCAGTAGAGTTTCTCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAAC 32667 |||||| |||| |||| | | ||||||||||| ||| || | ||||||||| | ||| Sbjct 20821326 TCAGTAAAGTTCTCCTTCCTTGTGAGTTTCAATTACAACGTCTGCAGTTGGATAGGAAAC 20821385 Query 32668 ACAAGTGAGCACAAACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTG 32727 ||| || |||||||| ||||| | || ||||| ||||||||||| || |||| || Sbjct 20821386 ACAGGTAAGCACAAAGCCTTCCTTAAGTTGATTGTCATCCAAGAAAGAGCCATCAGACTG 20821445 Query 32728 GTCTACTGTACCAGATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGA 32787 || |||| |||||| |||||||| || ||||||| || || || || || || || || Sbjct 20821446 ATCCACTGAACCAGAAACAATCTTTCCAGCACAAGTAGAGCATGCTCCAGCGCGGCACGA 20821505 Query 32788 GTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGATCATC 32841 || | ||||| ||| | | |||||||||||| | |||||| |||||| Sbjct 20821506 ATAAGGGAGTTCAACTCCAGCATTCTCTGCTGCATCTAAGATGTAAACATCATC 20821559 >seq1 Length=28142018 Score = 147 bits (162), Expect = 3e-30 Identities = 241/345 (70%), Gaps = 2/345 (1%) Strand=Plus/Minus Query 23964 GGATAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTG 24023 ||||| || ||||||||| | || || ||| || | ||||| || || | || ||||| Sbjct 23237844 GGATAAATCAGGAATACATAAACAAAAACAACACTTGGACCGGAGAATGTGATTGCATTA 23237785 Query 24024 TAGGGACGGATTCCAATTAGA-CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAG 24082 || || || | | || ||| | || |||||||| |||||||||||||||||||| | Sbjct 23237784 TAAGGCCGCAATTGAAC-AGATCAAGCAAGTTCAAATTGACGTAACATAAAACCTATTAA 23237726 Query 24083 TGCAAAGGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTG 24142 | | || |||||||| ||||||||||| | ||| | || || | ||| ||| | Sbjct 23237725 TCCGAAAGCACCGTGAAGAGCAACAAAAGTCCACATACCACCTAATTGACACCAACACGT 23237666 Query 24143 AAAGTCCCCTTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGC 24202 ||| || | || | | ||||||||| |||| | | |||||| | | | | | | Sbjct 23237665 AAAATCTTCATGTGCTTTAGGACCCCACAGTAACAACAAAGAATGTGCTAAACTATTAAC 23237606 Query 24203 AGGCGTCGAGACAGCTGCCGTAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCC 24262 ||| || ||||| || || || | |||||| ||| || | ||||||||| || | ||| Sbjct 23237605 AGGAGTAGAGACTGCCGCAGTTAAGAAGTTACAACCTTCCAAATAGGAACTTGCCAATCC 23237546 Query 24263 ATGGGTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACC 24307 ||| || ||||| || ||||| | || || || | |||||| Sbjct 23237545 ATGAGTATACCATGAAGTTACAAAGGTGGTACCTGTGAACCAACC 23237501 >seq7 Length=30551617 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 32608 TCAGTAGAGTTTCTCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAAC 32667 ||| ||||| | |||||| | || | ||| | | ||| ||||||||||| ||||| Sbjct 3659579 TCAATAGAGATCGCCTTCTTTGTGCGTGTGAATAACACAATCTGAAGTTGGATAGGCAAC 3659638 Query 32668 ACAAGTGAGCACAAACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTG 32727 ||| || |||||||| ||||| | |||||| | || || | | || |||| || Sbjct 3659639 ACAGGTTAGCACAAAACCTTCATTTATTTGACCGTCGTCGAGATATGAGCCATCAGACTG 3659698 Query 32728 GTCTACTGTACCAGATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGA 32787 ||||| | |||||| |||| ||| || ||||| | || || ||||| |||||||| || Sbjct 3659699 ATCTACAGAACCAGAAACAACCTTCCCAGCACAGGTAGAGCACGCACCAGCACGACACGA 3659758 Query 32788 GTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGATCATCAG 32843 || | ||||| || | | |||||||||||| | |||||| ||||||| Sbjct 3659759 ATATGGAAGTTCAACTCCTGCATTCTCTGCTGCATCTAAGATGTAAGTGTCATCAG 3659814 >seq2 Length=32560536 Score = 104 bits (114), Expect = 3e-17 Identities = 167/239 (70%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 32609 CAGTAGAGTTTCTCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACA 32668 |||| ||||| |||||| | | ||| ||||| |||||||||| || || | |||||| Sbjct 25898898 CAGT-GAGTTCCTCTTCCTTGTGAGTCTCAATAGTAACATCAGATGTAGGGAAAGCAACA 25898840 Query 32669 CAAGTGAGCACAAACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGG 32728 ||||| || || | ||| ||||||| || |||||||| | || || ||| || Sbjct 25898839 CAAGTAAGAACCCAACCTCCTTCAATCTGTTCATCATCAAGAAAAGAACCATCTTCCTGA 25898780 Query 32729 TCTACTGTACCAGATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAG 32788 | || ||||| |||| ||||| |||||||| ||||| | ||| || | || ||| Sbjct 25898779 TTAACATTACCATTAACAACTTTACCAGCACAAGAAGAACAAGAACCAGCTCTGCATGAG 25898720 Query 32789 TAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGATCATCAGCACA 32847 || | |||| ||| ||||||| || ||||| ||||| |||||| | ||| Sbjct 25898719 TAAGGAAGTTCAATTCCAACTTCCTCAGCATGGTCAAGAATGTAAACATCATCTGGACA 25898661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665169547227320